Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Smpd2-201ENSMUST00000019965 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gal3st4-203ENSMUST00000161647 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Fam118b-203ENSMUST00000121564 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gm12490-201ENSMUST00000120255 560 ntBASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Rpsa-ps9-201ENSMUST00000120702 885 ntBASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gm4598-201ENSMUST00000206756 1080 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gm10268-201ENSMUST00000085340 555 ntBASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gm2238-201ENSMUST00000192074 3669 ntBASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 H2-DMb2-201ENSMUST00000041982 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Myo7a-213ENSMUST00000205746 6689 ntTSL 5 BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Cdk5rap3Q99LM2 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Gm7789-202ENSMUST00000211273 1400 ntBASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Dab2ip-209ENSMUST00000135741 4128 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Eogt-201ENSMUST00000054344 4424 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Ambra1-204ENSMUST00000111316 5063 ntTSL 5 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Gm8018-201ENSMUST00000173536 789 ntBASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Reep1-202ENSMUST00000212631 953 ntTSL 5 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Gm43727-201ENSMUST00000198021 2647 ntBASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Rbm12b2-201ENSMUST00000063839 3327 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Cdk5rap3Q99LM2 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdk5rap3Q99LM2 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Cdk5rap3Q99LM2 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdk5rap3Q99LM2 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Cdk5rap3Q99LM2 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Cdk5rap3Q99LM2 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC12.78□□□□□ -0.36
Cdk5rap3Q99LM2 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms