Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Gm5136-201ENSMUST00000218023 1397 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Sept10-201ENSMUST00000165971 2532 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Fam53b-201ENSMUST00000065371 5052 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Nr4a3-201ENSMUST00000030025 5720 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Proser1-201ENSMUST00000058577 4472 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Clp1Q99LI9 Wdr54-205ENSMUST00000153148 4634 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Nav1-207ENSMUST00000190298 8557 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Cobl-208ENSMUST00000172919 2566 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Sun1-202ENSMUST00000078690 2608 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Slc52a3-201ENSMUST00000073228 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Ano6-201ENSMUST00000071874 4927 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 BC048403-202ENSMUST00000136432 2968 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm5795-201ENSMUST00000100920 984 ntAPPRIS P2 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm11663-201ENSMUST00000117888 290 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm11956-201ENSMUST00000119525 512 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm13263-201ENSMUST00000121271 838 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm11675-201ENSMUST00000121873 832 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Coa3-202ENSMUST00000168089 291 ntTSL 3 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm3685-201ENSMUST00000169215 984 ntAPPRIS P5 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm38114-201ENSMUST00000191877 1232 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm8956-201ENSMUST00000203939 825 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm2517-201ENSMUST00000215651 348 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm9797-202ENSMUST00000218003 294 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm5705-201ENSMUST00000066241 711 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm10338-201ENSMUST00000096148 984 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm18782-201ENSMUST00000209023 1399 ntBASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Hadhb-203ENSMUST00000114786 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 4933416C03Rik-201ENSMUST00000099261 2254 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Gucy2e-201ENSMUST00000021259 8331 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Pdcd6ip-202ENSMUST00000111861 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Ero1lb-202ENSMUST00000220811 3341 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Adamts7-207ENSMUST00000147250 4833 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Clp1Q99LI9 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Gm1113-201ENSMUST00000183573 2434 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
Clp1Q99LI9 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Esm1-201ENSMUST00000038144 2097 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13□□□□□ -0.33
Clp1Q99LI9 AC127242.1-201ENSMUST00000222861 1464 ntTSL 3 BASIC13□□□□□ -0.33
Clp1Q99LI9 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 4933403O08Rik-201ENSMUST00000132037 999 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
Clp1Q99LI9 Gm23771-201ENSMUST00000178702 110 ntBASIC13□□□□□ -0.33
Clp1Q99LI9 Gm28686-201ENSMUST00000187404 609 ntBASIC13□□□□□ -0.33
Clp1Q99LI9 Gm33201-201ENSMUST00000204791 855 ntTSL 3 BASIC13□□□□□ -0.33
Clp1Q99LI9 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13□□□□□ -0.33
Clp1Q99LI9 AC134860.1-201ENSMUST00000224867 660 ntBASIC13□□□□□ -0.33
Clp1Q99LI9 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC13□□□□□ -0.33
Clp1Q99LI9 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Pax6-201ENSMUST00000090391 2869 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Clp1Q99LI9 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC13□□□□□ -0.33
Clp1Q99LI9 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Clp1Q99LI9 Fgfr1-201ENSMUST00000084027 5025 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
Clp1Q99LI9 Draxin-201ENSMUST00000030862 5200 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Matn2-206ENSMUST00000228570 2798 ntBASIC12.99□□□□□ -0.33
Clp1Q99LI9 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Kdm5c-203ENSMUST00000112588 6449 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Trpm2-201ENSMUST00000105399 731 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Clp1Q99LI9 Gm15352-201ENSMUST00000118696 270 ntBASIC12.99□□□□□ -0.33
Clp1Q99LI9 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC12.99□□□□□ -0.33
Clp1Q99LI9 Gm12164-201ENSMUST00000121695 551 ntBASIC12.99□□□□□ -0.33
Clp1Q99LI9 Gm8737-201ENSMUST00000122208 642 ntBASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 95.5 ms