Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Zfp142-203ENSMUST00000113737 7473 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Aebp2-206ENSMUST00000161335 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Alas1-201ENSMUST00000074082 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Sh3rf1Q69ZI1 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Art3-206ENSMUST00000120416 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Ggnbp1-203ENSMUST00000133257 5012 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Emd-204ENSMUST00000119197 768 ntTSL 3 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm19087-201ENSMUST00000191430 946 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm4959-201ENSMUST00000197271 1044 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm44069-201ENSMUST00000204898 506 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm10608-202ENSMUST00000213924 676 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 AC135669.1-202ENSMUST00000216742 540 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 CT033793.1-201ENSMUST00000216883 565 ntTSL 5 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 AC154462.2-201ENSMUST00000227519 370 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm14608-201ENSMUST00000120030 1553 ntBASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Sh3rf1Q69ZI1 Gm15541-201ENSMUST00000147449 2713 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Mthfd1l-201ENSMUST00000043735 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Ppp1r12b-201ENSMUST00000045665 8840 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gfra1-203ENSMUST00000129100 4415 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm11658-201ENSMUST00000120913 1008 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm11851-201ENSMUST00000132219 692 ntTSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Psme1-202ENSMUST00000172738 681 ntTSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm6222-202ENSMUST00000182143 629 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm2467-201ENSMUST00000182266 1010 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm6981-201ENSMUST00000182467 1008 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm27390-201ENSMUST00000184516 176 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm29396-201ENSMUST00000185659 716 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm43758-201ENSMUST00000199500 367 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm18636-201ENSMUST00000218846 1066 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Lats2-202ENSMUST00000038381 933 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Retrieved 100 of 76,532 protein–RNA pairs in 76.8 ms