Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13□□□□□ -0.33
Upf3aQ3ULJ3 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Upf3aQ3ULJ3 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Prrc2a-201ENSMUST00000025253 6888 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Col26a1-201ENSMUST00000057497 2724 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm45643-201ENSMUST00000211364 1484 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 AC171277.1-201ENSMUST00000216902 1441 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Ifnar2-201ENSMUST00000023693 3047 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm26286-201ENSMUST00000104166 134 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm24891-201ENSMUST00000104391 136 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm14724-201ENSMUST00000118400 537 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm11667-201ENSMUST00000119828 486 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm14665-201ENSMUST00000122294 557 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm27530-201ENSMUST00000184096 98 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Mir6546-201ENSMUST00000184460 62 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm43916-201ENSMUST00000205062 967 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm4607-201ENSMUST00000206649 577 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 AC135469.1-201ENSMUST00000225984 772 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 AC093022.5-201ENSMUST00000226841 1079 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Pf4-201ENSMUST00000031320 588 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm26035-201ENSMUST00000083065 308 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm38346-201ENSMUST00000192379 2639 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Mrpl3-201ENSMUST00000035177 3972 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Caskin2-201ENSMUST00000041684 4929 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Upf3aQ3ULJ3 Tmem163-205ENSMUST00000185560 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Prrt3-201ENSMUST00000101059 3304 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Elmo3-202ENSMUST00000212033 2351 ntTSL 5 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm11509-201ENSMUST00000117358 325 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm12857-201ENSMUST00000117678 592 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm11511-201ENSMUST00000118146 540 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm7722-201ENSMUST00000120646 741 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm17391-201ENSMUST00000171036 126 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm8100-201ENSMUST00000182906 988 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Creb1-209ENSMUST00000190348 1260 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm6905-201ENSMUST00000205729 511 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Olfr707-202ENSMUST00000208759 1242 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Prrc2b-201ENSMUST00000036691 8612 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Necab1-201ENSMUST00000041606 4922 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Lrriq4-201ENSMUST00000108265 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Gm5385-201ENSMUST00000118988 1559 ntBASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 6230400D17Rik-201ENSMUST00000180987 1554 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Spop-202ENSMUST00000107724 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Upf3aQ3ULJ3 Micu1-201ENSMUST00000020311 2336 ntTSL 5 BASIC12.97□□□□□ -0.33
Upf3aQ3ULJ3 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.97□□□□□ -0.33
Upf3aQ3ULJ3 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3aQ3ULJ3 Rpe-202ENSMUST00000113995 2713 ntTSL 3 BASIC12.97□□□□□ -0.33
Upf3aQ3ULJ3 Tcirg1-211ENSMUST00000145791 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3aQ3ULJ3 Zfp862-ps-204ENSMUST00000204484 6065 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Upf3aQ3ULJ3 Gm44065-201ENSMUST00000203184 3527 ntBASIC12.97□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms