Protein–RNA interactions for Protein: Q07643

Col9a2, Collagen alpha-2(IX) chain, mousemouse

Predictions only

Length 688 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a2Q07643 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Ksr1-207ENSMUST00000226282 5260 ntBASIC13.35□□□□□ -0.27
Col9a2Q07643 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.35□□□□□ -0.27
Col9a2Q07643 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Hif1a-201ENSMUST00000021530 4724 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Ighg2c-201ENSMUST00000103416 1214 ntAPPRIS P5 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Gm18730-201ENSMUST00000218038 343 ntBASIC13.35□□□□□ -0.27
Col9a2Q07643 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Abhd14a-201ENSMUST00000048685 1256 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Col9a2Q07643 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Col9a2Q07643 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.34□□□□□ -0.27
Col9a2Q07643 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Arhgef12-202ENSMUST00000165665 10752 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Lsp1-205ENSMUST00000105968 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Kirrel-203ENSMUST00000159976 7236 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Ucp3-202ENSMUST00000107059 1260 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm18734-201ENSMUST00000172937 808 ntBASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm28071-201ENSMUST00000190355 478 ntBASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm6781-201ENSMUST00000038304 1242 ntBASIC13.34□□□□□ -0.27
Col9a2Q07643 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Gm10702-201ENSMUST00000098929 1268 ntBASIC13.34□□□□□ -0.27
Col9a2Q07643 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Egr3-204ENSMUST00000225200 3940 ntAPPRIS P2 BASIC13.34□□□□□ -0.27
Col9a2Q07643 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Scyl3-201ENSMUST00000027876 4368 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col9a2Q07643 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col9a2Q07643 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
Col9a2Q07643 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
Col9a2Q07643 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Agap1-202ENSMUST00000074945 10069 ntTSL 5 BASIC13.33□□□□□ -0.28
Col9a2Q07643 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Gm45118-201ENSMUST00000208928 825 ntBASIC13.33□□□□□ -0.28
Col9a2Q07643 Olfr1347-205ENSMUST00000220413 964 ntBASIC13.33□□□□□ -0.28
Col9a2Q07643 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Olfr1347-201ENSMUST00000036357 964 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Col9a2Q07643 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col9a2Q07643 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 28.6 ms