Protein–RNA interactions for Protein: Q07563

Col17a1, Collagen alpha-1(XVII) chain, mousemouse

Predictions only

Length 1,470 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col17a1Q07563 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 4930593A02Rik-201ENSMUST00000181694 1437 ntTSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Trim24-203ENSMUST00000120428 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Col17a1Q07563 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Slc39a8-201ENSMUST00000029810 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Cnih4-204ENSMUST00000134115 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Rab37-201ENSMUST00000021076 2210 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Col17a1Q07563 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC18.54■□□□□ 0.56
Col17a1Q07563 AC087890.1-201ENSMUST00000219321 1823 ntTSL 5 BASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Stard6-206ENSMUST00000174118 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm29651-201ENSMUST00000189088 697 ntBASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm21577-201ENSMUST00000190823 697 ntBASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm20802-201ENSMUST00000190832 698 ntBASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm43117-201ENSMUST00000198531 379 ntBASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm7504-201ENSMUST00000201449 424 ntBASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm3137-201ENSMUST00000218177 620 ntTSL 3 BASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm10228-201ENSMUST00000089105 532 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Col17a1Q07563 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Ak1-202ENSMUST00000113277 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Sema6d-201ENSMUST00000051419 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Gm37912-201ENSMUST00000191895 3076 ntBASIC18.53■□□□□ 0.56
Col17a1Q07563 Fam110b-209ENSMUST00000171403 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Rasa4-202ENSMUST00000100570 2660 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Col17a1Q07563 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Gm31274-201ENSMUST00000197356 229 ntBASIC18.52■□□□□ 0.56
Col17a1Q07563 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC18.52■□□□□ 0.56
Col17a1Q07563 AC134248.1-201ENSMUST00000216113 1176 ntBASIC18.52■□□□□ 0.56
Col17a1Q07563 AC154461.1-201ENSMUST00000224207 1005 ntBASIC18.52■□□□□ 0.56
Col17a1Q07563 AC118639.2-201ENSMUST00000226289 223 ntBASIC18.52■□□□□ 0.56
Col17a1Q07563 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Kcna5-201ENSMUST00000060972 2862 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Col17a1Q07563 Ppm1b-203ENSMUST00000112305 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.52■□□□□ 0.56
Col17a1Q07563 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 1600020E01Rik-206ENSMUST00000204663 2007 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Slc22a2-201ENSMUST00000046959 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Osm-201ENSMUST00000075221 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Acin1-219ENSMUST00000148754 2373 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
Col17a1Q07563 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Rcsd1-201ENSMUST00000040357 2622 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.56
Col17a1Q07563 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Ss18-201ENSMUST00000040924 3090 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
Col17a1Q07563 Src-202ENSMUST00000092576 3887 ntTSL 5 BASIC18.52■□□□□ 0.56
Col17a1Q07563 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm7405-201ENSMUST00000121476 1337 ntBASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm22344-201ENSMUST00000122642 278 ntBASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm12273-201ENSMUST00000137418 1084 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm10807-201ENSMUST00000177134 795 ntBASIC18.52■□□□□ 0.55
Col17a1Q07563 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Rnf4-204ENSMUST00000182047 2944 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm38145-201ENSMUST00000192319 693 ntBASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm8255-201ENSMUST00000218693 305 ntBASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm29689-201ENSMUST00000221076 589 ntBASIC18.52■□□□□ 0.55
Col17a1Q07563 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Apln-201ENSMUST00000039026 3149 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Col17a1Q07563 Gm10750-201ENSMUST00000099266 1506 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
Col17a1Q07563 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Ugt1a5-201ENSMUST00000097659 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Prkcd-202ENSMUST00000112202 2005 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Gm42751-201ENSMUST00000198065 559 ntBASIC18.51■□□□□ 0.55
Col17a1Q07563 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC18.51■□□□□ 0.55
Col17a1Q07563 Gm5291-201ENSMUST00000201965 899 ntBASIC18.51■□□□□ 0.55
Col17a1Q07563 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Bcl2l1-201ENSMUST00000007803 2417 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Itfg1-201ENSMUST00000034140 3306 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Lrrc8a-202ENSMUST00000113654 4194 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Col17a1Q07563 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Col17a1Q07563 Gm43134-201ENSMUST00000199434 1886 ntBASIC18.5■□□□□ 0.55
Col17a1Q07563 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col17a1Q07563 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Col17a1Q07563 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 146.1 ms