Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Atp1b2-201ENSMUST00000047889 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Hdac10-201ENSMUST00000082197 2412 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Pdss2-202ENSMUST00000159139 1467 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm26883-201ENSMUST00000180945 4878 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 R3hdml-201ENSMUST00000109416 1094 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Isg20-204ENSMUST00000121645 1087 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm11978-201ENSMUST00000122315 466 ntBASIC11.28□□□□□ -0.6
Cdh11P55288 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.28□□□□□ -0.6
Cdh11P55288 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Kctd18-210ENSMUST00000164963 2114 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 AU022754-201ENSMUST00000180441 2976 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm38297-201ENSMUST00000195122 1057 ntBASIC11.28□□□□□ -0.6
Cdh11P55288 Gm37008-201ENSMUST00000195712 319 ntBASIC11.28□□□□□ -0.6
Cdh11P55288 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Svip-203ENSMUST00000209193 487 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm18636-201ENSMUST00000218846 1066 ntBASIC11.28□□□□□ -0.6
Cdh11P55288 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 4930563D23Rik-201ENSMUST00000062638 2646 ntAPPRIS P1 BASIC11.28□□□□□ -0.6
Cdh11P55288 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Gm5620-201ENSMUST00000077991 1348 ntBASIC11.28□□□□□ -0.6
Cdh11P55288 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Pdxk-201ENSMUST00000041616 5124 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 CT025678.1-201ENSMUST00000214795 2972 ntBASIC11.28□□□□□ -0.6
Cdh11P55288 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Cdh11P55288 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.6
Cdh11P55288 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Ptprm-203ENSMUST00000224091 3773 ntBASIC11.27□□□□□ -0.6
Cdh11P55288 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC11.27□□□□□ -0.6
Cdh11P55288 Bach2os-201ENSMUST00000126225 1661 ntTSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.6
Cdh11P55288 Satb2-205ENSMUST00000177424 4694 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Pcdhgc4-201ENSMUST00000066140 5024 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Tnk1-201ENSMUST00000001626 2778 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Cdh11P55288 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Tufm-202ENSMUST00000106392 1754 ntTSL 2 BASIC11.27□□□□□ -0.61
Cdh11P55288 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Gm15198-201ENSMUST00000117283 177 ntBASIC11.27□□□□□ -0.61
Cdh11P55288 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.27□□□□□ -0.61
Cdh11P55288 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC11.27□□□□□ -0.61
Cdh11P55288 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Gm26927-201ENSMUST00000182385 965 ntBASIC11.27□□□□□ -0.61
Cdh11P55288 Gm43179-201ENSMUST00000198797 275 ntBASIC11.27□□□□□ -0.61
Cdh11P55288 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC11.27□□□□□ -0.61
Cdh11P55288 Gm20083-202ENSMUST00000206663 1008 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Gm18054-201ENSMUST00000207539 555 ntBASIC11.27□□□□□ -0.61
Cdh11P55288 AC140406.1-201ENSMUST00000226481 465 ntBASIC11.27□□□□□ -0.61
Cdh11P55288 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Celsr3-207ENSMUST00000213524 9930 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Cdh11P55288 Zic4-204ENSMUST00000172646 2535 ntAPPRIS P1 TSL 5 BASIC11.27□□□□□ -0.61
Cdh11P55288 Cyp8b1-201ENSMUST00000062474 1950 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms