Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Cdx2P43241 Gm7593-201ENSMUST00000187246 644 ntBASIC11.73□□□□□ -0.53
Cdx2P43241 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Gm37795-201ENSMUST00000194216 2459 ntBASIC11.73□□□□□ -0.53
Cdx2P43241 Gm43045-201ENSMUST00000198725 2095 ntBASIC11.73□□□□□ -0.53
Cdx2P43241 Gm42629-201ENSMUST00000199063 1102 ntBASIC11.73□□□□□ -0.53
Cdx2P43241 Fgf5-202ENSMUST00000200059 600 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Hrc-202ENSMUST00000211327 607 ntTSL 5 BASIC11.73□□□□□ -0.53
Cdx2P43241 AC091458.1-201ENSMUST00000220902 1361 ntBASIC11.73□□□□□ -0.53
Cdx2P43241 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Rgma-201ENSMUST00000094312 3586 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC11.73□□□□□ -0.53
Cdx2P43241 Cadps2-209ENSMUST00000142913 4533 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
Cdx2P43241 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Cdx2P43241 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Cdx2P43241 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Edrf1-201ENSMUST00000051169 5424 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.72□□□□□ -0.53
Cdx2P43241 AC171277.1-201ENSMUST00000216902 1441 ntBASIC11.72□□□□□ -0.53
Cdx2P43241 Lgals8-202ENSMUST00000099821 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Gm26286-201ENSMUST00000104166 134 ntBASIC11.72□□□□□ -0.53
Cdx2P43241 Gm11511-201ENSMUST00000118146 540 ntBASIC11.72□□□□□ -0.53
Cdx2P43241 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC11.72□□□□□ -0.53
Cdx2P43241 Gm12951-201ENSMUST00000150216 434 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.72□□□□□ -0.53
Cdx2P43241 Gm17231-203ENSMUST00000170133 637 ntTSL 3 BASIC11.72□□□□□ -0.53
Cdx2P43241 Gm4131-201ENSMUST00000186010 1264 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Cdx2P43241 Gm9463-201ENSMUST00000206707 601 ntBASIC11.72□□□□□ -0.53
Cdx2P43241 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC11.72□□□□□ -0.53
Cdx2P43241 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC11.72□□□□□ -0.53
Cdx2P43241 Mdga1-201ENSMUST00000073556 7566 ntAPPRIS P2 TSL 5 BASIC11.72□□□□□ -0.53
Cdx2P43241 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.72□□□□□ -0.53
Cdx2P43241 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Gtpbp1-201ENSMUST00000046463 3398 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Coq4-201ENSMUST00000028137 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Klhl12-201ENSMUST00000027725 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Cdx2P43241 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Cdx2P43241 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Ccdc92b-201ENSMUST00000100866 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Ap2a1-202ENSMUST00000107857 3301 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Gm21998-201ENSMUST00000117552 1308 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Gm14314-201ENSMUST00000118225 1015 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 Gm16195-201ENSMUST00000130607 442 ntTSL 2 BASIC11.71□□□□□ -0.53
Cdx2P43241 Gm4726-201ENSMUST00000135604 736 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 Gm6019-201ENSMUST00000148369 736 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC11.71□□□□□ -0.53
Cdx2P43241 Insig2-214ENSMUST00000186915 674 ntTSL 3 BASIC11.71□□□□□ -0.53
Cdx2P43241 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 CT485607.1-201ENSMUST00000216100 85 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 AC151275.1-201ENSMUST00000224870 585 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 AC171241.1-201ENSMUST00000228144 1166 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Gm9785-201ENSMUST00000062642 1006 ntBASIC11.71□□□□□ -0.53
Cdx2P43241 Nrf1-207ENSMUST00000115206 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Cdx2P43241 Nrp2-204ENSMUST00000102822 6708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Nrp2-203ENSMUST00000075144 6723 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Eme1-201ENSMUST00000039949 2444 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC11.71□□□□□ -0.54
Cdx2P43241 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Galnt6-201ENSMUST00000052069 3798 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Eml6-201ENSMUST00000058902 8083 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Cdx2P43241 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC11.71□□□□□ -0.54
Cdx2P43241 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Cdx2P43241 Gm42829-201ENSMUST00000198417 2585 ntBASIC11.71□□□□□ -0.54
Cdx2P43241 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC11.7□□□□□ -0.54
Cdx2P43241 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx2P43241 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx2P43241 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Cdx2P43241 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms