Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Ap5m1-205ENSMUST00000227431 3757 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Slc39a3-201ENSMUST00000059551 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Dnm2-201ENSMUST00000072362 3502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Dnm1-203ENSMUST00000113350 3258 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
Col18a1P39061 Trim26-201ENSMUST00000053434 3198 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Gm9796-201ENSMUST00000062249 2250 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col18a1P39061 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Gm12247-201ENSMUST00000117585 670 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Gm13286-201ENSMUST00000117750 537 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Gm12129-201ENSMUST00000120104 1147 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Gm16305-201ENSMUST00000140747 556 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Gm5335-201ENSMUST00000182995 1000 ntBASIC15.93■□□□□ 0.14
Col18a1P39061 Tbc1d21-201ENSMUST00000040217 1283 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Krtap12-1-201ENSMUST00000092370 656 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Col18a1P39061 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
Col18a1P39061 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Col18a1P39061 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
Col18a1P39061 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 4731419I09Rik-201ENSMUST00000180791 2820 ntTSL 2 BASIC15.92■□□□□ 0.14
Col18a1P39061 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 AC166491.1-201ENSMUST00000227053 2308 ntBASIC15.92■□□□□ 0.14
Col18a1P39061 Capn9-201ENSMUST00000093033 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Thnsl2-202ENSMUST00000160918 2077 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC15.92■□□□□ 0.14
Col18a1P39061 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC15.92■□□□□ 0.14
Col18a1P39061 Ppy-202ENSMUST00000170554 487 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Gm29304-201ENSMUST00000186555 695 ntBASIC15.92■□□□□ 0.14
Col18a1P39061 Gm29223-201ENSMUST00000188867 695 ntBASIC15.92■□□□□ 0.14
Col18a1P39061 Gm37921-201ENSMUST00000194333 695 ntBASIC15.92■□□□□ 0.14
Col18a1P39061 Zfp445-205ENSMUST00000214626 1220 ntTSL 5 BASIC15.92■□□□□ 0.14
Col18a1P39061 AC152169.1-201ENSMUST00000223901 701 ntBASIC15.92■□□□□ 0.14
Col18a1P39061 BC048507-201ENSMUST00000078471 600 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Col18a1P39061 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC15.92■□□□□ 0.14
Col18a1P39061 Rreb1-202ENSMUST00000110237 4617 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Zfp385b-203ENSMUST00000111830 2642 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC15.92■□□□□ 0.14
Col18a1P39061 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Bcat2-203ENSMUST00000209204 2081 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Pde8b-207ENSMUST00000162153 2474 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Col18a1P39061 Atp2c2-201ENSMUST00000095171 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Socs6-202ENSMUST00000123826 2921 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm23769-201ENSMUST00000104441 121 ntBASIC15.91■□□□□ 0.14
Col18a1P39061 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm11981-201ENSMUST00000139769 664 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 U2af1l4-218ENSMUST00000166960 747 ntTSL 3 BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm17190-202ENSMUST00000185178 1074 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm18010-201ENSMUST00000203553 202 ntBASIC15.91■□□□□ 0.14
Col18a1P39061 Bcl2l12-205ENSMUST00000207755 605 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
Col18a1P39061 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Col18a1P39061 Prok2-201ENSMUST00000008273 594 ntTSL 3 BASIC15.91■□□□□ 0.14
Col18a1P39061 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
Col18a1P39061 Lrrc56-202ENSMUST00000070458 2502 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Gm42863-201ENSMUST00000197875 2958 ntBASIC15.91■□□□□ 0.14
Col18a1P39061 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC15.91■□□□□ 0.14
Col18a1P39061 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
Col18a1P39061 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC15.91■□□□□ 0.14
Col18a1P39061 Steap2-201ENSMUST00000015797 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col18a1P39061 Gm15707-201ENSMUST00000118804 996 ntBASIC15.9■□□□□ 0.14
Col18a1P39061 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC15.9■□□□□ 0.14
Col18a1P39061 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Col18a1P39061 Gm26047-201ENSMUST00000157308 113 ntBASIC15.9■□□□□ 0.14
Col18a1P39061 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Col18a1P39061 Gm6114-201ENSMUST00000182472 968 ntBASIC15.9■□□□□ 0.14
Col18a1P39061 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC15.9■□□□□ 0.14
Col18a1P39061 Gm26047-202ENSMUST00000198840 115 ntBASIC15.9■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms