Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm2420-201ENSMUST00000119864 2149 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Mir453-201ENSMUST00000104732 82 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm12946-201ENSMUST00000122969 519 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Snhg3-202ENSMUST00000141090 581 ntTSL 2 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm20493-201ENSMUST00000173706 213 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm23694-201ENSMUST00000179335 110 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm26901-202ENSMUST00000193106 256 ntTSL 3 BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm45090-201ENSMUST00000208775 1148 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 AC174797.2-201ENSMUST00000225835 165 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gm9867-201ENSMUST00000192212 2647 ntBASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Scn4aQ9ER60 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Lmbr1l-202ENSMUST00000109127 2548 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Psmd1-201ENSMUST00000027432 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm15626-201ENSMUST00000117478 868 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm16209-201ENSMUST00000118457 627 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm10171-201ENSMUST00000126220 628 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Spata3-205ENSMUST00000130504 1100 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm16441-201ENSMUST00000138176 924 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm43244-201ENSMUST00000196994 1285 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm43106-201ENSMUST00000199485 637 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 D5Ertd605e-201ENSMUST00000201128 1081 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm39117-201ENSMUST00000207692 1569 ntTSL 5 BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 AC115304.2-201ENSMUST00000226399 332 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 AC164437.3-201ENSMUST00000228323 347 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Gm10233-201ENSMUST00000089275 628 ntBASIC16.39■□□□□ 0.21
Scn4aQ9ER60 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Lrrc17-201ENSMUST00000035651 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Scn4aQ9ER60 Txndc9-208ENSMUST00000195247 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Klk1b5-201ENSMUST00000074359 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Asgr1-202ENSMUST00000092959 1308 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Gm15374-201ENSMUST00000119313 844 ntBASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Mir7051-201ENSMUST00000184167 73 ntBASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Gm39091-201ENSMUST00000206189 553 ntTSL 2 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Klhdc8b-207ENSMUST00000193286 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Lime1-201ENSMUST00000048077 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Reep5-201ENSMUST00000006027 2894 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Prkacb-202ENSMUST00000102515 4347 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Hoxd3-202ENSMUST00000111982 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Smap1-202ENSMUST00000129254 1365 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Cd300ld5-201ENSMUST00000100239 852 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Cd300ld4-201ENSMUST00000100240 852 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Gm15540-201ENSMUST00000136052 674 ntTSL 2 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Gm4982-201ENSMUST00000160440 1098 ntBASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Tnnc1-202ENSMUST00000169169 721 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Gm26610-201ENSMUST00000181529 1024 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 AC107752.1-201ENSMUST00000219362 469 ntBASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Sectm1b-202ENSMUST00000081499 1222 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Cd300ld3-201ENSMUST00000092459 852 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 AC122335.2-201ENSMUST00000213901 6181 ntBASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Pnkd-203ENSMUST00000087226 3054 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
Scn4aQ9ER60 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms