Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Snap25-202ENSMUST00000110098 1014 ntAPPRIS ALT1 TSL 3 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Gm11478-201ENSMUST00000117851 599 ntBASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Sbk3-201ENSMUST00000133272 1086 ntAPPRIS ALT2 TSL 5 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Gm18584-201ENSMUST00000203098 964 ntBASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Gm22058-201ENSMUST00000083393 310 ntBASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
Lsm1Q8VC85 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Sgk1-203ENSMUST00000100036 2476 ntTSL 5 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Sgk1-201ENSMUST00000020145 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Cd74-202ENSMUST00000097563 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Mmp28-202ENSMUST00000103209 3438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 CT025678.1-201ENSMUST00000214795 2972 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm11591-201ENSMUST00000120063 702 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm12502-201ENSMUST00000120197 444 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm43818-201ENSMUST00000200605 466 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm6007-201ENSMUST00000208170 823 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm7653-201ENSMUST00000214567 508 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Gm45930-201ENSMUST00000221330 292 ntBASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Selenot-201ENSMUST00000107924 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Lsm1Q8VC85 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Bub1-201ENSMUST00000028858 3421 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Epb41l2-204ENSMUST00000217929 3621 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Gm12314-201ENSMUST00000118104 538 ntBASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Gm9083-201ENSMUST00000120423 819 ntBASIC11.86□□□□□ -0.51
Lsm1Q8VC85 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 AC151971.1-201ENSMUST00000217329 993 ntTSL 5 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Wdyhv1-206ENSMUST00000227142 786 ntBASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.86□□□□□ -0.51
Lsm1Q8VC85 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Lsm1Q8VC85 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.86□□□□□ -0.51
Lsm1Q8VC85 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 47.8 ms