Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Prrxl1-205ENSMUST00000228878 723 ntBASIC10.59□□□□□ -0.71
Col8a1Q00780 Nudt2-201ENSMUST00000030154 845 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Mrpl50-201ENSMUST00000057829 2114 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Rdh16f2-201ENSMUST00000092058 1265 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Plk4-203ENSMUST00000203295 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 E330023G01Rik-201ENSMUST00000186387 1483 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Dnajb4-201ENSMUST00000029669 1497 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
Col8a1Q00780 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC10.59□□□□□ -0.71
Col8a1Q00780 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC10.59□□□□□ -0.71
Col8a1Q00780 Gm20149-201ENSMUST00000214691 1667 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Mettl1-201ENSMUST00000006915 1791 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC10.59□□□□□ -0.71
Col8a1Q00780 Mapk4-201ENSMUST00000091851 4594 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Slc35c2-202ENSMUST00000109298 1991 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Ube2g1-201ENSMUST00000021148 3815 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.71
Col8a1Q00780 Wdr31-201ENSMUST00000030087 1440 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gcdh-202ENSMUST00000109745 2114 ntAPPRIS ALT2 TSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Rph3a-203ENSMUST00000202326 2621 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Colgalt1-201ENSMUST00000047903 3207 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Mul1-201ENSMUST00000044058 3733 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm37644-201ENSMUST00000192190 2270 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Slc25a14-201ENSMUST00000033431 1760 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Auts2-208ENSMUST00000161374 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm13323-201ENSMUST00000120245 1151 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Ankrd29-202ENSMUST00000122408 850 ntTSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Rmrp-201ENSMUST00000157463 271 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm7535-201ENSMUST00000164167 909 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Abhd14a-203ENSMUST00000171925 1122 ntTSL 3 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm8018-201ENSMUST00000173536 789 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm29187-201ENSMUST00000186681 689 ntTSL 3 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 1700030I03Rik-201ENSMUST00000192978 942 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm9463-201ENSMUST00000206707 601 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm39404-201ENSMUST00000216350 313 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 AL732506.1-201ENSMUST00000226420 281 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Azgp1-201ENSMUST00000035390 1297 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm6781-201ENSMUST00000038304 1242 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Ginm1-202ENSMUST00000065124 300 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm25007-201ENSMUST00000083808 133 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm21811-201ENSMUST00000096485 930 ntBASIC10.58□□□□□ -0.72
Col8a1Q00780 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Chfr-201ENSMUST00000014812 3146 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Rnf185-201ENSMUST00000064364 2906 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Mafk-201ENSMUST00000018287 2849 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Duxf3-202ENSMUST00000176875 2025 ntAPPRIS P1 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Gm45740-201ENSMUST00000212103 2003 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Mfsd4a-205ENSMUST00000144548 3288 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC10.58□□□□□ -0.72
Col8a1Q00780 Pla2g5-204ENSMUST00000102513 2289 ntAPPRIS P1 TSL 5 BASIC10.58□□□□□ -0.72
Col8a1Q00780 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Stau2-215ENSMUST00000162435 2735 ntTSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Men1-202ENSMUST00000078137 2738 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Usf1-207ENSMUST00000160486 1878 ntTSL 2 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Cbarp-214ENSMUST00000169546 2980 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 AC122371.1-201ENSMUST00000220876 1477 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Gm13848-201ENSMUST00000130777 2047 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Eya4-206ENSMUST00000219315 3100 ntAPPRIS ALT2 TSL 5 BASIC10.57□□□□□ -0.72
Col8a1Q00780 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Lrrc29-201ENSMUST00000070508 1922 ntTSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Max-201ENSMUST00000082136 1926 ntAPPRIS ALT1 TSL 1 (best) BASIC10.57□□□□□ -0.72
Col8a1Q00780 Prrxl1-202ENSMUST00000186452 2371 ntAPPRIS P1 TSL 5 BASIC10.57□□□□□ -0.72
Retrieved 100 of 76,532 protein–RNA pairs in 49.7 ms