Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Traf1P39428 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Traf1P39428 Thtpa-201ENSMUST00000050575 2830 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Ptpru-203ENSMUST00000105987 5484 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Traf1P39428 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Pdxdc1-204ENSMUST00000115804 2880 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Mir3102-201ENSMUST00000175555 104 ntBASIC14.35□□□□□ -0.11
Traf1P39428 Gm18304-201ENSMUST00000189162 546 ntBASIC14.35□□□□□ -0.11
Traf1P39428 Rps4l-202ENSMUST00000204242 789 ntBASIC14.35□□□□□ -0.11
Traf1P39428 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC14.35□□□□□ -0.11
Traf1P39428 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC14.35□□□□□ -0.11
Traf1P39428 Gzmn-202ENSMUST00000225535 989 ntBASIC14.35□□□□□ -0.11
Traf1P39428 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Traf1P39428 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Stk25-201ENSMUST00000027498 4249 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Traf1P39428 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Armc8-201ENSMUST00000035043 4647 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 AC164702.1-201ENSMUST00000220135 2212 ntBASIC14.35□□□□□ -0.11
Traf1P39428 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Eif4enif1-202ENSMUST00000110048 3712 ntTSL 5 BASIC14.35□□□□□ -0.11
Traf1P39428 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Calcoco1-201ENSMUST00000023818 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Ppfia4-201ENSMUST00000168515 6067 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Traf1P39428 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 BC055324-201ENSMUST00000045876 3179 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Gm24231-201ENSMUST00000104315 133 ntBASIC14.34□□□□□ -0.11
Traf1P39428 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Traf1P39428 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Gm14644-201ENSMUST00000116671 647 ntBASIC14.34□□□□□ -0.11
Traf1P39428 Gm14028-201ENSMUST00000117434 479 ntBASIC14.34□□□□□ -0.11
Traf1P39428 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Traf1P39428 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Gm9230-201ENSMUST00000188228 532 ntBASIC14.34□□□□□ -0.11
Traf1P39428 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC14.34□□□□□ -0.11
Traf1P39428 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 AC110091.1-201ENSMUST00000216004 691 ntTSL 3 BASIC14.34□□□□□ -0.11
Traf1P39428 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC14.34□□□□□ -0.11
Traf1P39428 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Ccdc85a-204ENSMUST00000109502 5220 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Sema3d-201ENSMUST00000030868 6307 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC14.34□□□□□ -0.11
Traf1P39428 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Adam32-202ENSMUST00000121438 2450 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Traf1P39428 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Traf1P39428 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
Traf1P39428 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Traf1P39428 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Traf1P39428 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Traf1P39428 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Traf1P39428 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Gm4909-201ENSMUST00000118749 794 ntBASIC14.33□□□□□ -0.12
Traf1P39428 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC14.33□□□□□ -0.12
Traf1P39428 Aif1-203ENSMUST00000172693 842 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Gm44958-201ENSMUST00000203734 736 ntBASIC14.33□□□□□ -0.12
Traf1P39428 Gm45598-202ENSMUST00000210719 986 ntBASIC14.33□□□□□ -0.12
Traf1P39428 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Traf1P39428 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Traf1P39428 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms