Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Ctdsp2-202ENSMUST00000105256 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Pdlim2-201ENSMUST00000022681 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 1700065D16Rik-205ENSMUST00000190890 2903 ntBASIC15.97■□□□□ 0.15
Col18a1P39061 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 1810026B05Rik-208ENSMUST00000190028 590 ntTSL 3 BASIC15.97■□□□□ 0.15
Col18a1P39061 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Nmral1-204ENSMUST00000120056 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Col18a1P39061 Uba1y-ps1-201ENSMUST00000188314 1708 ntBASIC15.96■□□□□ 0.15
Col18a1P39061 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Col18a1P39061 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Irx6-201ENSMUST00000034185 3370 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
Col18a1P39061 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Hsd3b3-204ENSMUST00000107019 1533 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Col18a1P39061 Fut9-202ENSMUST00000108199 2579 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Rufy3-203ENSMUST00000196894 3703 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC15.96■□□□□ 0.15
Col18a1P39061 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 1700021J08Rik-201ENSMUST00000138729 575 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Mir7035-201ENSMUST00000184713 82 ntBASIC15.96■□□□□ 0.15
Col18a1P39061 Gm2345-201ENSMUST00000193451 589 ntBASIC15.96■□□□□ 0.15
Col18a1P39061 Gm36982-201ENSMUST00000193796 1128 ntBASIC15.96■□□□□ 0.15
Col18a1P39061 Gm35960-201ENSMUST00000202712 767 ntBASIC15.96■□□□□ 0.15
Col18a1P39061 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Zfp595-205ENSMUST00000171466 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Col18a1P39061 Polr2c-202ENSMUST00000211939 3881 ntTSL 2 BASIC15.96■□□□□ 0.15
Col18a1P39061 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col18a1P39061 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC15.96■□□□□ 0.14
Col18a1P39061 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
Col18a1P39061 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col18a1P39061 Ube2g1-203ENSMUST00000138247 3931 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Col18a1P39061 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
Col18a1P39061 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC15.95■□□□□ 0.14
Col18a1P39061 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC15.95■□□□□ 0.14
Col18a1P39061 Pex5l-203ENSMUST00000108221 1187 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Col18a1P39061 Cidec-203ENSMUST00000113091 785 ntAPPRIS ALT1 TSL 3 BASIC15.95■□□□□ 0.14
Col18a1P39061 Gm12337-201ENSMUST00000119634 400 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 2610318N02Rik-202ENSMUST00000207116 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 AC154436.1-201ENSMUST00000227272 782 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Col18a1P39061 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Nepn-201ENSMUST00000067085 1844 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Atf7-202ENSMUST00000108828 2887 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Ankrd7-202ENSMUST00000115396 1157 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Gm15197-201ENSMUST00000120526 478 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Tex33-203ENSMUST00000169575 942 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Col18a1P39061 Gm23694-201ENSMUST00000179335 110 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 Gm8384-201ENSMUST00000190905 704 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 Gm9369-201ENSMUST00000196009 733 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 Ly86-201ENSMUST00000021860 1134 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Capsl-202ENSMUST00000226688 739 ntBASIC15.95■□□□□ 0.14
Col18a1P39061 Krtap19-5-201ENSMUST00000053460 483 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
Col18a1P39061 Slc37a1-201ENSMUST00000165149 3354 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Rhobtb1-205ENSMUST00000164034 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Col18a1P39061 Fbxo21-201ENSMUST00000035579 3883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Col26a1-202ENSMUST00000111103 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Fam114a2-202ENSMUST00000108850 1765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Bpi-202ENSMUST00000109499 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Rab3c-202ENSMUST00000223922 2398 ntBASIC15.94■□□□□ 0.14
Col18a1P39061 Cdkn2aip-202ENSMUST00000212175 3393 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Gm20495-201ENSMUST00000173902 235 ntBASIC15.94■□□□□ 0.14
Col18a1P39061 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Col18a1P39061 Gm37365-201ENSMUST00000193109 409 ntBASIC15.94■□□□□ 0.14
Col18a1P39061 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 AC098716.1-201ENSMUST00000213527 703 ntBASIC15.94■□□□□ 0.14
Col18a1P39061 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC15.94■□□□□ 0.14
Col18a1P39061 Gm9791-201ENSMUST00000060997 447 ntBASIC15.94■□□□□ 0.14
Col18a1P39061 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Gps1-201ENSMUST00000100134 1925 ntTSL 2 BASIC15.94■□□□□ 0.14
Col18a1P39061 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Abcg5-201ENSMUST00000066175 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
Col18a1P39061 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms