Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Gm28085-201ENSMUST00000189281 1137 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 AC132384.14-201ENSMUST00000219346 1147 ntBASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Sqle-202ENSMUST00000100640 2636 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC13.5□□□□□ -0.25
Chmp6P0C0A3 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Tmem63b-201ENSMUST00000113523 3284 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Sf1-208ENSMUST00000131252 4353 ntAPPRIS P4 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Allc-202ENSMUST00000110917 1384 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Gm26799-201ENSMUST00000180959 1361 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Rnf182-201ENSMUST00000059986 3544 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Poc1b-201ENSMUST00000020113 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Dnmt3l-205ENSMUST00000138785 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Gm13316-201ENSMUST00000140537 691 ntBASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Usp46os2-201ENSMUST00000152787 831 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Gm44405-201ENSMUST00000198952 126 ntBASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Gm45930-201ENSMUST00000221330 292 ntBASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Ebag9-201ENSMUST00000022964 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Chmp6P0C0A3 Igbp1b-201ENSMUST00000054786 1456 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Rnf113a2-201ENSMUST00000183146 1383 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm595-201ENSMUST00000114928 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm12241-201ENSMUST00000118330 726 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm4986-201ENSMUST00000119731 549 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm16296-201ENSMUST00000159905 325 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm6334-201ENSMUST00000207083 228 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 4933421D24Rik-201ENSMUST00000209302 1286 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm45925-201ENSMUST00000218882 744 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm9368-201ENSMUST00000219348 831 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Gm42840-201ENSMUST00000200303 2251 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Wfs1-201ENSMUST00000043964 3787 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Chmp6P0C0A3 4933406P04Rik-201ENSMUST00000092680 1789 ntBASIC13.48□□□□□ -0.25
Chmp6P0C0A3 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 76,532 protein–RNA pairs in 81.2 ms