Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Col5a1O88207 Efr3a-205ENSMUST00000173858 2848 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.01□□□□□ -0.65
Col5a1O88207 Zmiz1os1-201ENSMUST00000156682 3469 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm11422-201ENSMUST00000118925 1103 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC11.01□□□□□ -0.65
Col5a1O88207 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm28686-201ENSMUST00000187404 609 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 1700008A23Rik-201ENSMUST00000191694 691 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Gm38151-201ENSMUST00000195085 289 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 AC151275.1-201ENSMUST00000224870 585 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm26448-201ENSMUST00000082446 203 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Ecsit-203ENSMUST00000179422 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm5434-202ENSMUST00000222384 1451 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm5434-201ENSMUST00000071825 1451 ntBASIC11.01□□□□□ -0.65
Col5a1O88207 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC11.01□□□□□ -0.65
Col5a1O88207 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Col5a1O88207 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 AC160405.1-201ENSMUST00000218207 1545 ntBASIC11□□□□□ -0.65
Col5a1O88207 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Agbl3-201ENSMUST00000115009 806 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11□□□□□ -0.65
Col5a1O88207 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC11□□□□□ -0.65
Col5a1O88207 Gm13965-201ENSMUST00000154834 576 ntTSL 3 BASIC11□□□□□ -0.65
Col5a1O88207 Gm3150-201ENSMUST00000166418 204 ntBASIC11□□□□□ -0.65
Col5a1O88207 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Gm29499-201ENSMUST00000189151 486 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm28329-201ENSMUST00000191208 689 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm29171-201ENSMUST00000191397 486 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm17877-201ENSMUST00000192578 814 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm37458-201ENSMUST00000194055 410 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm43186-201ENSMUST00000198130 824 ntBASIC11□□□□□ -0.65
Col5a1O88207 Chn2-212ENSMUST00000204115 783 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Gm45484-201ENSMUST00000210310 1141 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm43721-201ENSMUST00000199677 2313 ntBASIC11□□□□□ -0.65
Col5a1O88207 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Gm42928-201ENSMUST00000197338 3339 ntBASIC11□□□□□ -0.65
Col5a1O88207 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Plcb3-201ENSMUST00000025912 4201 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Arap1-204ENSMUST00000107010 5147 ntAPPRIS P2 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Gm44758-201ENSMUST00000206096 2068 ntBASIC11□□□□□ -0.65
Col5a1O88207 Tmprss9-203ENSMUST00000219817 3581 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Uqcc1-202ENSMUST00000109631 1091 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Gm14274-201ENSMUST00000117182 615 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm13549-201ENSMUST00000118339 796 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm13022-201ENSMUST00000121181 285 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Olfr431-ps1-201ENSMUST00000192435 544 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC11□□□□□ -0.65
Col5a1O88207 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Gm38117-201ENSMUST00000194653 939 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11□□□□□ -0.65
Col5a1O88207 Gm2875-201ENSMUST00000211333 360 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm40879-201ENSMUST00000220759 612 ntBASIC11□□□□□ -0.65
Col5a1O88207 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC11□□□□□ -0.65
Col5a1O88207 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Col5a1O88207 Rasl11a-201ENSMUST00000031646 1126 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms