Protein–RNA interactions for Protein: S4R1M3

H2afb2, Histone H2A, mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H2afb2S4R1M3 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Fgd2-201ENSMUST00000024810 2612 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Mier1-205ENSMUST00000106858 4830 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Unc5d-201ENSMUST00000168630 9220 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Egfl6-201ENSMUST00000000412 2704 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
H2afb2S4R1M3 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Kcnk16-202ENSMUST00000225596 2127 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Slc16a12-201ENSMUST00000009522 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ldhal6b-201ENSMUST00000189788 1445 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Epm2aip1-201ENSMUST00000060711 7149 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Rpl3-ps2-201ENSMUST00000117131 1214 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Trav4d-2-201ENSMUST00000120914 335 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Hmgcll1-207ENSMUST00000183979 1136 ntTSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm37424-201ENSMUST00000191727 561 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm37201-201ENSMUST00000191845 523 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm5850-201ENSMUST00000192923 1206 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm19309-201ENSMUST00000218295 205 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Gm8227-201ENSMUST00000223306 571 ntBASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Lim2-201ENSMUST00000004732 884 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
H2afb2S4R1M3 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Dixdc1-202ENSMUST00000117093 1613 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Kdm1b-201ENSMUST00000037025 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Gm38002-201ENSMUST00000193255 180 ntBASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Gm43133-201ENSMUST00000197472 463 ntBASIC12.37□□□□□ -0.43
H2afb2S4R1M3 4933436H12Rik-201ENSMUST00000207304 658 ntTSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 AC166349.1-201ENSMUST00000220866 695 ntBASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Gm34084-201ENSMUST00000222236 1298 ntTSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 AC133598.1-201ENSMUST00000224327 660 ntBASIC12.37□□□□□ -0.43
H2afb2S4R1M3 AC140406.1-201ENSMUST00000226481 465 ntBASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Sp4-203ENSMUST00000222314 2677 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Irf6-201ENSMUST00000076521 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
H2afb2S4R1M3 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms