Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm13722-201ENSMUST00000117964 3066 ntBASIC12.73□□□□□ -0.37
Vps28Q9D1C8 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm6210-201ENSMUST00000204734 1942 ntBASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Tmem237-202ENSMUST00000094917 1869 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm22323-201ENSMUST00000103832 109 ntBASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 2310057J18Rik-201ENSMUST00000015663 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Rps19-ps11-201ENSMUST00000160308 433 ntBASIC12.72□□□□□ -0.37
Vps28Q9D1C8 S100a14-202ENSMUST00000167598 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm9257-201ENSMUST00000221254 232 ntBASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Tbkbp1-204ENSMUST00000107615 3333 ntAPPRIS P2 TSL 5 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Gm6015-201ENSMUST00000217493 1586 ntBASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Ptpn1-201ENSMUST00000029053 4213 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Klhl18-201ENSMUST00000068025 4530 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Lrrc8c-201ENSMUST00000067924 6976 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Vps28Q9D1C8 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Mat2b-202ENSMUST00000101347 2053 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 AC159195.1-201ENSMUST00000225867 2086 ntBASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm8862-201ENSMUST00000198379 1346 ntBASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm15547-201ENSMUST00000122152 333 ntBASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm17376-201ENSMUST00000166016 84 ntBASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm45484-201ENSMUST00000210310 1141 ntBASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm39404-201ENSMUST00000216350 313 ntBASIC12.71□□□□□ -0.37
Vps28Q9D1C8 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Vps28Q9D1C8 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Chmp5-201ENSMUST00000030128 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Gm19817-201ENSMUST00000199764 2132 ntBASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
Vps28Q9D1C8 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC12.71□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 80.6 ms