Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm15966-201ENSMUST00000136853 480 ntTSL 3 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Gm20482-202ENSMUST00000174729 825 ntBASIC13.91□□□□□ -0.18
Smc1aQ9CU62 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Gm5773-201ENSMUST00000090853 1143 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Vsx2-202ENSMUST00000169934 3249 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Pdzrn4-202ENSMUST00000169942 3851 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Gm3052-202ENSMUST00000188254 2224 ntBASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Cenpl-202ENSMUST00000111618 1996 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Nt5c3b-203ENSMUST00000107397 1348 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Snx10-201ENSMUST00000049152 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Pabpc2-201ENSMUST00000063219 2586 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Grm4-202ENSMUST00000118489 2976 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Gm37437-201ENSMUST00000194451 1937 ntBASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Plod3-201ENSMUST00000004968 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Gm44086-201ENSMUST00000203251 2349 ntBASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Cep89-201ENSMUST00000079414 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Atp6v0e-201ENSMUST00000015719 794 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Nat8f1-201ENSMUST00000161198 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Tmcc1-205ENSMUST00000173031 1024 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Gm20636-201ENSMUST00000176660 707 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Gm4768-201ENSMUST00000206199 686 ntBASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Pnpla5-201ENSMUST00000019012 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Ralgps2-207ENSMUST00000188656 2481 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Mfsd9-201ENSMUST00000039672 3160 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Rps6kb1-202ENSMUST00000058286 3250 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Faah-201ENSMUST00000049095 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Zkscan3-207ENSMUST00000223831 2101 ntBASIC13.9□□□□□ -0.18
Smc1aQ9CU62 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Smc1aQ9CU62 Mkl1-209ENSMUST00000149582 4366 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Smc1aQ9CU62 Gm44207-201ENSMUST00000204568 1424 ntBASIC13.9□□□□□ -0.19
Smc1aQ9CU62 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Smc1aQ9CU62 Gpr176-201ENSMUST00000039160 3899 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.19
Smc1aQ9CU62 Zfp341-201ENSMUST00000081926 3299 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Wwox-203ENSMUST00000109108 1771 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm16793-201ENSMUST00000181322 1680 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Sdccag8-202ENSMUST00000056773 1551 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm3756-201ENSMUST00000169182 1355 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm25668-201ENSMUST00000157700 129 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm3890-201ENSMUST00000182416 207 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Stambp-ps1-201ENSMUST00000209280 1208 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Caly-203ENSMUST00000211044 1029 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm21769-201ENSMUST00000211922 111 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 n-R5s77-201ENSMUST00000083757 119 ntBASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Cidec-201ENSMUST00000032416 1703 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Smc1aQ9CU62 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms