Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm10434-201ENSMUST00000101158 471 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm14017-201ENSMUST00000121934 386 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 B9d1os-201ENSMUST00000137010 674 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm13316-201ENSMUST00000140537 691 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm8738-201ENSMUST00000172606 329 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Grp-203ENSMUST00000173985 952 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm27341-201ENSMUST00000183570 106 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Ube2a-202ENSMUST00000200835 911 ntTSL 5 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Ube2a-209ENSMUST00000202991 715 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm45186-201ENSMUST00000206874 478 ntBASIC13.91□□□□□ -0.18
Ushbp1Q8R370 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm40437-201ENSMUST00000222338 767 ntTSL 5 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Olfr1368-201ENSMUST00000055298 1064 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Ushbp1Q8R370 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm7789-202ENSMUST00000211273 1400 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Krit1-201ENSMUST00000080085 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm12012-201ENSMUST00000118857 1066 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm14726-201ENSMUST00000120623 896 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Rbm3-ps-201ENSMUST00000121422 465 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Fhit-206ENSMUST00000162278 981 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm8176-201ENSMUST00000191297 1099 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 AC108416.1-202ENSMUST00000228927 1201 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Crip3-201ENSMUST00000024764 955 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Daam2-202ENSMUST00000224595 1926 ntBASIC13.9□□□□□ -0.18
Ushbp1Q8R370 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC13.9□□□□□ -0.19
Ushbp1Q8R370 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
Ushbp1Q8R370 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Mllt6-202ENSMUST00000107586 7206 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Gm2260-201ENSMUST00000184965 657 ntBASIC13.89□□□□□ -0.19
Ushbp1Q8R370 1700065D16Rik-203ENSMUST00000189279 393 ntTSL 2 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Tmem176b-209ENSMUST00000204073 986 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Bach2-202ENSMUST00000108180 8882 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
Ushbp1Q8R370 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.89□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 72.6 ms