Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm29052-201ENSMUST00000187700 1451 ntTSL 5 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Chchd3-201ENSMUST00000066379 1550 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm44292-201ENSMUST00000205194 2364 ntBASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Mast1-201ENSMUST00000109741 4872 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Gm14243-201ENSMUST00000131401 2172 ntTSL 2 BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Upf3bQ3ULL6 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm15198-201ENSMUST00000117283 177 ntBASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm11222-201ENSMUST00000119005 738 ntBASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Crb3-205ENSMUST00000169543 778 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm44172-201ENSMUST00000203903 1235 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm45331-201ENSMUST00000209868 554 ntBASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 D630033O11Rik-204ENSMUST00000210588 1358 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Taldo1-204ENSMUST00000211654 1362 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm37391-201ENSMUST00000194891 2318 ntBASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Dtnb-201ENSMUST00000077930 2376 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Upf3bQ3ULL6 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Tmem219-203ENSMUST00000120007 1087 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gm15501-201ENSMUST00000133910 849 ntTSL 3 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Pgghg-204ENSMUST00000164580 3001 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gstp1-201ENSMUST00000169613 757 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gm8494-201ENSMUST00000178171 1233 ntBASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gm43721-201ENSMUST00000199677 2313 ntBASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 AC153845.2-201ENSMUST00000217535 673 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Mrvi1-201ENSMUST00000005751 6198 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Tln1-201ENSMUST00000030187 8393 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC13.26□□□□□ -0.29
Upf3bQ3ULL6 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Acly-203ENSMUST00000107389 4426 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Upf3bQ3ULL6 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms