Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC11.92□□□□□ -0.5
Sox3P53784 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Gm9279-201ENSMUST00000223175 1606 ntBASIC11.92□□□□□ -0.5
Sox3P53784 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Sox3P53784 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Sox3P53784 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Sox3P53784 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC11.92□□□□□ -0.5
Sox3P53784 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC11.92□□□□□ -0.5
Sox3P53784 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Zc3h4-202ENSMUST00000209289 5853 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Zfand4-202ENSMUST00000112900 3220 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Cabp1-203ENSMUST00000112112 746 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Gm16202-201ENSMUST00000117532 544 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Gm11531-201ENSMUST00000117614 555 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Gm5070-201ENSMUST00000177599 862 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Gm44405-201ENSMUST00000198952 126 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC11.91□□□□□ -0.5
Sox3P53784 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Gm8385-201ENSMUST00000058999 643 ntBASIC11.91□□□□□ -0.5
Sox3P53784 Olfr450-201ENSMUST00000067503 933 ntAPPRIS P1 BASIC11.91□□□□□ -0.5
Sox3P53784 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Acer1-201ENSMUST00000056113 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Fgfr3-211ENSMUST00000171509 4020 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Iba57-201ENSMUST00000054523 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox3P53784 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Urgcp-202ENSMUST00000093362 5089 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Pigh-201ENSMUST00000072154 2339 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Sox3P53784 Trappc9-204ENSMUST00000170633 4688 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Lmf2-201ENSMUST00000023283 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Copb2-201ENSMUST00000035033 3050 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.9□□□□□ -0.5
Sox3P53784 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Rbpj-207ENSMUST00000201883 4961 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Rbm11-203ENSMUST00000114253 2699 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Nfasc-207ENSMUST00000187861 4927 ntTSL 5 BASIC11.9□□□□□ -0.5
Sox3P53784 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Cntf-201ENSMUST00000112933 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Gm13611-201ENSMUST00000118269 318 ntBASIC11.9□□□□□ -0.5
Sox3P53784 Gm26185-201ENSMUST00000157692 266 ntBASIC11.9□□□□□ -0.5
Sox3P53784 Glod4-201ENSMUST00000017430 1434 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Mir7221-201ENSMUST00000184009 72 ntBASIC11.9□□□□□ -0.5
Sox3P53784 Gm44551-201ENSMUST00000208804 171 ntBASIC11.9□□□□□ -0.5
Sox3P53784 0610005C13Rik-202ENSMUST00000209510 671 ntTSL 3 BASIC11.9□□□□□ -0.5
Sox3P53784 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Sox3P53784 Gm45765-201ENSMUST00000212027 1035 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Gm5950-201ENSMUST00000213337 772 ntBASIC11.9□□□□□ -0.5
Sox3P53784 Gm32141-201ENSMUST00000220189 488 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 CT025694.1-201ENSMUST00000226188 934 ntBASIC11.9□□□□□ -0.5
Sox3P53784 AC131330.1-201ENSMUST00000227814 1015 ntBASIC11.9□□□□□ -0.5
Sox3P53784 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Zfp12-203ENSMUST00000077485 4294 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Rhbdd2-201ENSMUST00000043707 4207 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.9□□□□□ -0.5
Sox3P53784 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox3P53784 Nrf1-209ENSMUST00000115209 2406 ntTSL 5 BASIC11.9□□□□□ -0.5
Sox3P53784 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.9□□□□□ -0.5
Sox3P53784 7420426K07Rik-201ENSMUST00000098460 1504 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Sox3P53784 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Sox3P53784 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 53.5 ms