Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Ercc3P49135 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Tmem201-202ENSMUST00000103208 3620 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Ercc3P49135 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Ercc3P49135 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Tacc3-202ENSMUST00000079534 2899 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC14.73□□□□□ -0.05
Ercc3P49135 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Ercc3P49135 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC14.73□□□□□ -0.05
Ercc3P49135 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
Ercc3P49135 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Ercc3P49135 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Ercc3P49135 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
Ercc3P49135 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
Ercc3P49135 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC14.73□□□□□ -0.05
Ercc3P49135 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Nmral1-203ENSMUST00000115851 1306 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Zcchc18-202ENSMUST00000101227 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Apol7c-201ENSMUST00000062562 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Gm3961-201ENSMUST00000204425 994 ntBASIC14.72□□□□□ -0.05
Ercc3P49135 Gm33056-201ENSMUST00000213234 1120 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Ltbp2-203ENSMUST00000163189 6470 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.72□□□□□ -0.05
Ercc3P49135 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
Ercc3P49135 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC14.72□□□□□ -0.05
Ercc3P49135 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Col14a1-203ENSMUST00000110221 5679 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 AC154262.2-202ENSMUST00000225158 1331 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Ptprm-203ENSMUST00000224091 3773 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Bicd1-202ENSMUST00000086829 9667 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Ercc3P49135 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC14.71□□□□□ -0.05
Ercc3P49135 Gm22323-201ENSMUST00000103832 109 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
Ercc3P49135 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Ercc3P49135 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.71□□□□□ -0.05
Ercc3P49135 Gm26956-201ENSMUST00000182176 986 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC14.71□□□□□ -0.05
Ercc3P49135 AC169036.1-201ENSMUST00000227994 296 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Lrrc52-201ENSMUST00000036643 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Gm10076-201ENSMUST00000073238 384 ntBASIC14.71□□□□□ -0.05
Ercc3P49135 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
Ercc3P49135 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
Ercc3P49135 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 4931429P17Rik-201ENSMUST00000061899 2012 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
Ercc3P49135 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC14.71□□□□□ -0.06
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms