Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm10097-201ENSMUST00000180100 2784 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
RaraP11416 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
RaraP11416 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
RaraP11416 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC13.4□□□□□ -0.26
RaraP11416 Gm8018-201ENSMUST00000173536 789 ntBASIC13.4□□□□□ -0.26
RaraP11416 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Gm6222-202ENSMUST00000182143 629 ntBASIC13.4□□□□□ -0.26
RaraP11416 Gm7653-201ENSMUST00000214567 508 ntBASIC13.4□□□□□ -0.26
RaraP11416 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC13.4□□□□□ -0.26
RaraP11416 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Gm22058-201ENSMUST00000083393 310 ntBASIC13.4□□□□□ -0.26
RaraP11416 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Tnfrsf13b-201ENSMUST00000010286 2556 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
RaraP11416 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
RaraP11416 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC13.4□□□□□ -0.27
RaraP11416 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC13.39□□□□□ -0.27
RaraP11416 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Gm5620-201ENSMUST00000077991 1348 ntBASIC13.39□□□□□ -0.27
RaraP11416 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
RaraP11416 Tbc1d2-201ENSMUST00000084621 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Nckipsd-201ENSMUST00000035218 3360 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
RaraP11416 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
RaraP11416 Gm11591-201ENSMUST00000120063 702 ntBASIC13.39□□□□□ -0.27
RaraP11416 Gm23119-201ENSMUST00000158610 140 ntBASIC13.39□□□□□ -0.27
RaraP11416 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Gga3-201ENSMUST00000019135 3816 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC13.39□□□□□ -0.27
RaraP11416 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
RaraP11416 Gm43930-201ENSMUST00000203868 845 ntBASIC13.39□□□□□ -0.27
RaraP11416 Mt3-203ENSMUST00000211930 477 ntTSL 2 BASIC13.39□□□□□ -0.27
RaraP11416 AC122459.1-201ENSMUST00000228373 885 ntBASIC13.39□□□□□ -0.27
RaraP11416 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
RaraP11416 Agxt2-204ENSMUST00000110542 2198 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Gm17276-201ENSMUST00000180839 2782 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Cyth4-201ENSMUST00000043069 2791 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC13.39□□□□□ -0.27
RaraP11416 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
RaraP11416 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
RaraP11416 Tor3a-201ENSMUST00000079625 3285 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
RaraP11416 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
RaraP11416 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Lrguk-202ENSMUST00000101564 967 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Hist1h4b-201ENSMUST00000102965 397 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
RaraP11416 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Gm35960-201ENSMUST00000202712 767 ntBASIC13.38□□□□□ -0.27
RaraP11416 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Prss39-201ENSMUST00000027299 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Lrp8os1-201ENSMUST00000030352 672 ntTSL 5 BASIC13.38□□□□□ -0.27
RaraP11416 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Kcnt1-201ENSMUST00000037580 5881 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 AC122860.2-201ENSMUST00000217967 2671 ntBASIC13.38□□□□□ -0.27
RaraP11416 Rev3l-201ENSMUST00000019986 10713 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
RaraP11416 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 67.4 ms