Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Clec4a3-201ENSMUST00000088468 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Bpi-203ENSMUST00000109500 1911 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Tmprss11d-202ENSMUST00000122377 2256 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm37513-201ENSMUST00000194830 2268 ntBASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm38378-201ENSMUST00000195153 2268 ntBASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Chfr-202ENSMUST00000112519 3159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm37981-201ENSMUST00000194280 535 ntBASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm37013-201ENSMUST00000194544 313 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm18463-201ENSMUST00000207258 474 ntBASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm18460-201ENSMUST00000208088 464 ntBASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm9508-201ENSMUST00000220084 693 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Gm36423-202ENSMUST00000222215 1298 ntTSL 5 BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Cby1-201ENSMUST00000023064 1119 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Tex35-201ENSMUST00000027884 909 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Hfm1D3Z4R1 Morf4l2-202ENSMUST00000080411 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Nxf2-202ENSMUST00000113187 2316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Gm45638-201ENSMUST00000211507 2878 ntBASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Elp4-202ENSMUST00000122965 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Rap1gap-203ENSMUST00000105835 4140 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Fbxo34-203ENSMUST00000163324 3132 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Adcyap1-201ENSMUST00000064775 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Zfp593-201ENSMUST00000030644 1994 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Gm12198-201ENSMUST00000154068 1809 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Gm13791-201ENSMUST00000123263 608 ntTSL 3 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Uba52-201ENSMUST00000081940 541 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Wdr36-202ENSMUST00000166214 2942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC17.11■□□□□ 0.33
Hfm1D3Z4R1 Zkscan3-207ENSMUST00000223831 2101 ntBASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Myoc-201ENSMUST00000028020 2074 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Cmpk2-201ENSMUST00000020969 3200 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Gm5422-202ENSMUST00000216161 2928 ntTSL 5 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 AC122018.1-201ENSMUST00000217769 1686 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Tmem39a-204ENSMUST00000163884 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Fam3a-201ENSMUST00000015427 1427 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Gm38391-201ENSMUST00000191720 4069 ntBASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Gm45576-201ENSMUST00000210981 1322 ntTSL 5 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Cenpx-203ENSMUST00000106154 873 ntTSL 2 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Gm13609-201ENSMUST00000141023 589 ntTSL 3 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Gm7959-201ENSMUST00000221823 1078 ntBASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Fgd4-211ENSMUST00000162671 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Hfm1D3Z4R1 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hfm1D3Z4R1 Pam-202ENSMUST00000097625 4102 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
Hfm1D3Z4R1 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hfm1D3Z4R1 Hlcs-205ENSMUST00000227141 4021 ntAPPRIS ALT2 BASIC17.09■□□□□ 0.33
Hfm1D3Z4R1 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Hfm1D3Z4R1 Gm45643-201ENSMUST00000211364 1484 ntBASIC17.09■□□□□ 0.33
Hfm1D3Z4R1 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms