Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm5638-201ENSMUST00000118618 1258 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm13813-201ENSMUST00000120998 787 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 6330418K02Rik-201ENSMUST00000124298 743 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Ablim2-213ENSMUST00000150146 415 ntTSL 2 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm27206-201ENSMUST00000154038 979 ntTSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Agtpbp1-213ENSMUST00000167096 508 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm22121-201ENSMUST00000175148 54 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm6013-201ENSMUST00000212264 699 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm32025-201ENSMUST00000217960 307 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 AC154462.2-201ENSMUST00000227519 370 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Ambp-201ENSMUST00000030041 1268 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Acacb-201ENSMUST00000031583 8482 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Pbld2-201ENSMUST00000020262 2212 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Fbxw7-201ENSMUST00000029727 2221 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Camta2-202ENSMUST00000100933 4383 ntAPPRIS ALT2 TSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Camta2-204ENSMUST00000108545 4377 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Camta2-206ENSMUST00000120261 4398 ntTSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm44942-201ENSMUST00000096093 2072 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Gm37472-201ENSMUST00000192342 4052 ntBASIC11.72□□□□□ -0.53
Trim3Q9R1R2 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Pcdh8-204ENSMUST00000195355 3704 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Trim3Q9R1R2 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Sin3b-201ENSMUST00000004494 4115 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Gm44086-201ENSMUST00000203251 2349 ntBASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Tekt4-201ENSMUST00000025002 1532 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Pnck-203ENSMUST00000114473 1492 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Gm12291-201ENSMUST00000121627 311 ntBASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Gm12347-201ENSMUST00000127883 470 ntTSL 3 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Gm15635-202ENSMUST00000131160 917 ntTSL 3 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Nudt17-202ENSMUST00000171249 1110 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Gm9823-201ENSMUST00000051212 327 ntBASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Mir339-201ENSMUST00000083659 96 ntBASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Ppm1l-201ENSMUST00000029355 9417 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Trim3Q9R1R2 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Trim3Q9R1R2 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Adra1a-206ENSMUST00000225182 2337 ntBASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Tnfrsf22-203ENSMUST00000146692 2298 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Aamp-202ENSMUST00000178235 1756 ntAPPRIS ALT1 TSL 5 BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Snord83b-201ENSMUST00000104546 94 ntBASIC11.7□□□□□ -0.54
Trim3Q9R1R2 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
Trim3Q9R1R2 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 88.2 ms