Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm15573-201ENSMUST00000119487 540 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Mir1956-201ENSMUST00000157748 65 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 1700029J03Rik-201ENSMUST00000185803 789 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Ighv1-48-201ENSMUST00000191795 294 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 Ighv6-7-201ENSMUST00000193397 357 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 Gtf3c6-201ENSMUST00000019982 887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Gm45398-201ENSMUST00000210561 165 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 Gm19640-201ENSMUST00000214849 464 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 AC166344.1-201ENSMUST00000223745 674 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Scn11aQ9R053 AC122840.1-201ENSMUST00000220915 3334 ntBASIC14.49□□□□□ -0.09
Scn11aQ9R053 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 8430408G22Rik-202ENSMUST00000178241 1317 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 2900089D17Rik-201ENSMUST00000124015 2475 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Scn11aQ9R053 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Ldb3-204ENSMUST00000064098 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm5053-201ENSMUST00000208361 1678 ntBASIC14.48□□□□□ -0.09
Scn11aQ9R053 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Ptgr2-208ENSMUST00000147363 1869 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Ggn-202ENSMUST00000098609 2653 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Kcnt1-211ENSMUST00000171268 3771 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm15004-201ENSMUST00000119192 630 ntBASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm13257-201ENSMUST00000132840 665 ntTSL 3 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm43692-201ENSMUST00000198236 1062 ntBASIC14.48□□□□□ -0.09
Scn11aQ9R053 Colec11-203ENSMUST00000220836 887 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 AC154184.3-201ENSMUST00000225620 1090 ntBASIC14.48□□□□□ -0.09
Scn11aQ9R053 Sstr2-201ENSMUST00000067591 1041 ntTSL 2 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Tspyl3-201ENSMUST00000099194 3072 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.48□□□□□ -0.09
Scn11aQ9R053 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Per3-201ENSMUST00000103204 5999 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Wscd1-201ENSMUST00000021168 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Scn11aQ9R053 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Nudt1-205ENSMUST00000110827 744 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm12969-201ENSMUST00000120199 1004 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Mir7076-201ENSMUST00000183519 74 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm27241-202ENSMUST00000185013 570 ntTSL 2 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm28324-201ENSMUST00000187913 264 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm29499-201ENSMUST00000189151 486 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm28329-201ENSMUST00000191208 689 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm29171-201ENSMUST00000191397 486 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm44270-201ENSMUST00000203084 1234 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Sdf2-201ENSMUST00000002133 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm18974-201ENSMUST00000221478 1031 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm44414-201ENSMUST00000203660 2109 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Kdm4b-202ENSMUST00000086835 4360 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Pcnx2-204ENSMUST00000131127 3782 ntTSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Banp-201ENSMUST00000026354 1970 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Dph7-201ENSMUST00000028351 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Capzb-201ENSMUST00000030518 1390 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Olfr520-202ENSMUST00000220185 1330 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 n-R5s64-201ENSMUST00000102019 119 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm11354-201ENSMUST00000121974 422 ntBASIC14.47□□□□□ -0.09
Scn11aQ9R053 Sumo3-203ENSMUST00000124024 776 ntTSL 2 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm16271-201ENSMUST00000162837 220 ntTSL 5 BASIC14.47□□□□□ -0.09
Scn11aQ9R053 2610316D01Rik-201ENSMUST00000181047 924 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Scn11aQ9R053 CT009713.8-202ENSMUST00000224732 385 ntBASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms