Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Gm12009-201ENSMUST00000121361 1100 ntBASIC16.46■□□□□ 0.23
Scn4aQ9ER60 St8sia3os-204ENSMUST00000140903 383 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Gm4903-201ENSMUST00000210462 405 ntBASIC16.46■□□□□ 0.23
Scn4aQ9ER60 4930546C10Rik-201ENSMUST00000025428 363 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Tbrg1-201ENSMUST00000117654 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Mirg-208ENSMUST00000182499 3187 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Ttll3-201ENSMUST00000032414 3168 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Omp-201ENSMUST00000098281 2144 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC16.46■□□□□ 0.23
Scn4aQ9ER60 Ccrl2-203ENSMUST00000199839 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn4aQ9ER60 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.22
Scn4aQ9ER60 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
Scn4aQ9ER60 Lca5-202ENSMUST00000034793 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn4aQ9ER60 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Scn4aQ9ER60 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Pcdh1-203ENSMUST00000160721 5416 ntTSL 5 BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Ighv1-62-3-201ENSMUST00000103532 405 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm14165-201ENSMUST00000121456 952 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm5706-201ENSMUST00000181525 993 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm7765-201ENSMUST00000182585 974 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm9369-201ENSMUST00000196009 733 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 CT025689.1-201ENSMUST00000225214 283 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 AC238940.1-201ENSMUST00000225106 1858 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gstm4-203ENSMUST00000178808 1462 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Prss23os-202ENSMUST00000179361 1362 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm22937-201ENSMUST00000103954 131 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm15746-201ENSMUST00000120684 1027 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Rplp0-ps1-201ENSMUST00000122125 933 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Gm7741-201ENSMUST00000181445 989 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Plet1os-202ENSMUST00000190941 1119 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 5830411K02Rik-201ENSMUST00000200000 997 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 1810059H22Rik-207ENSMUST00000204809 289 ntTSL 3 BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Scn4aQ9ER60 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Drd5-201ENSMUST00000041646 3152 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Zfp169-203ENSMUST00000176176 2162 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Bnc2-215ENSMUST00000176691 3385 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Nit1-203ENSMUST00000111296 1394 ntTSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Pla2g1b-204ENSMUST00000145785 419 ntTSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Gm45783-201ENSMUST00000210877 656 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Mkrn1-ps1-201ENSMUST00000122035 1390 ntBASIC16.44■□□□□ 0.22
Scn4aQ9ER60 Twsg1-201ENSMUST00000024906 4046 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Dstyk-204ENSMUST00000188389 3232 ntTSL 5 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Slc31a2-202ENSMUST00000107467 868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Tmem181c-ps-201ENSMUST00000115772 1288 ntBASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Gm17606-201ENSMUST00000169818 234 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Auts2-216ENSMUST00000185450 144 ntTSL 5 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Gm8268-201ENSMUST00000209683 458 ntBASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Gm12248-203ENSMUST00000219877 1160 ntAPPRIS P5 TSL 5 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 AC159261.1-201ENSMUST00000222493 911 ntTSL 2 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Gm5468-202ENSMUST00000227851 682 ntBASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Olfr1015-201ENSMUST00000047870 1016 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Scn4aQ9ER60 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 48.1 ms