Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Trem3-201ENSMUST00000048065 994 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Arl13b-201ENSMUST00000089289 3528 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gm43417-201ENSMUST00000201586 5207 ntBASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Fn1-211ENSMUST00000187938 7965 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gm43321-201ENSMUST00000198897 2409 ntBASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Gm45342-201ENSMUST00000210903 1363 ntBASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
Ddx56Q9D0R4 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gnat2-201ENSMUST00000058669 2054 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Pitpnb-204ENSMUST00000200298 2632 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm10434-201ENSMUST00000101158 471 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Pin4-201ENSMUST00000113627 489 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm12957-201ENSMUST00000117835 377 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm833-201ENSMUST00000143133 884 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 H2afz-206ENSMUST00000173790 437 ntTSL 5 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Oaz1-207ENSMUST00000180036 1044 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 1500004A13Rik-208ENSMUST00000184958 823 ntTSL 3 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm37201-201ENSMUST00000191845 523 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm38158-201ENSMUST00000194617 339 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Rfxank-203ENSMUST00000212320 1121 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm45880-201ENSMUST00000213041 853 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Mal-201ENSMUST00000028853 486 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 2310026I22Rik-201ENSMUST00000180941 1300 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Myo10-202ENSMUST00000110457 8125 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.06□□□□□ -0.32
Ddx56Q9D0R4 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm4780-202ENSMUST00000215200 2644 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm8062-201ENSMUST00000139696 444 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Pisd-ps1-203ENSMUST00000145164 789 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Mir7085-201ENSMUST00000184353 66 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm44958-201ENSMUST00000203734 736 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm44882-201ENSMUST00000205702 802 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Fuca2-203ENSMUST00000121465 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm37737-201ENSMUST00000195013 1638 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Vmn1r45-207ENSMUST00000228492 2849 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Ddx56Q9D0R4 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 51.1 ms