Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gfod2-201ENSMUST00000013294 4352 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
Smc1aQ9CU62 Scn5a-201ENSMUST00000065196 8287 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
Smc1aQ9CU62 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Smc1aQ9CU62 Abca3-201ENSMUST00000039013 6476 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
Smc1aQ9CU62 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Pappa-201ENSMUST00000084501 11027 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Taz-204ENSMUST00000124200 1742 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 AC122860.2-201ENSMUST00000217967 2671 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Syne3-203ENSMUST00000109927 5263 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm14608-201ENSMUST00000120030 1553 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm4986-201ENSMUST00000119731 549 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm7809-201ENSMUST00000153199 742 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm26185-201ENSMUST00000157692 266 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Mospd4-201ENSMUST00000180618 576 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm44985-201ENSMUST00000206202 1016 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 C030034I22Rik-202ENSMUST00000188481 4231 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Ppp2r2b-203ENSMUST00000120632 2081 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Mrm3-201ENSMUST00000040577 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Rin3-201ENSMUST00000056950 3892 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Gm37324-201ENSMUST00000194500 4504 ntBASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Tmem41b-202ENSMUST00000118429 2774 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Stx18-203ENSMUST00000114126 3002 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Tulp2-201ENSMUST00000024233 1749 ntAPPRIS P5 TSL 1 (best) BASIC13.93□□□□□ -0.18
Smc1aQ9CU62 Ckm-203ENSMUST00000208710 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Smc5-202ENSMUST00000223934 3448 ntAPPRIS P2 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 BC003331-203ENSMUST00000097546 3174 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Ush1c-206ENSMUST00000154292 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm22323-201ENSMUST00000103832 109 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm24255-201ENSMUST00000104481 128 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Alpk3-201ENSMUST00000107348 6369 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm9431-201ENSMUST00000119765 1051 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Rn7s1-201ENSMUST00000174924 300 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Rn7s2-201ENSMUST00000175032 300 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm26461-201ENSMUST00000175064 290 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Ighv1-62-201ENSMUST00000193406 350 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 CT573034.1-201ENSMUST00000222983 313 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Gm19163-201ENSMUST00000223313 780 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 AC022775.2-201ENSMUST00000227885 646 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Mir433-201ENSMUST00000093564 124 ntBASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Rasgrp4-214ENSMUST00000205027 2717 ntTSL 5 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Dus2-201ENSMUST00000034375 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Rad54b-202ENSMUST00000095145 2403 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Cant1-203ENSMUST00000106287 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Avpr2-201ENSMUST00000033765 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Tmem115-201ENSMUST00000010189 2194 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Rapgef3-204ENSMUST00000128775 3586 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 3110062M04Rik-203ENSMUST00000115007 3326 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
Smc1aQ9CU62 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Gm8793-201ENSMUST00000183069 1303 ntBASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Calr3-201ENSMUST00000019876 1769 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 AC096628.2-201ENSMUST00000225443 1413 ntBASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Wdr25-206ENSMUST00000221510 1600 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Gcom1-201ENSMUST00000163998 1726 ntAPPRIS P5 TSL 5 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Tada3-202ENSMUST00000043333 1708 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
Smc1aQ9CU62 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms