Protein–RNA interactions for Protein: Q99JW4

Lims1, LIM and senescent cell antigen-like-containing domain protein 1, mousemouse

Predictions only

Length 325 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lims1Q99JW4 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 AC069562.3-201ENSMUST00000225387 587 ntBASIC11.33□□□□□ -0.6
Lims1Q99JW4 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Usmg5-201ENSMUST00000096014 341 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Cdc37l1-207ENSMUST00000225210 4163 ntAPPRIS ALT2 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Plch2-206ENSMUST00000135665 4349 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Adam22-203ENSMUST00000088744 9245 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Megf6-201ENSMUST00000030897 6851 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Vat1l-201ENSMUST00000049509 3666 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Srr-201ENSMUST00000065211 3699 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Prrx1-204ENSMUST00000174397 6527 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Stox2-201ENSMUST00000079195 10467 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC11.33□□□□□ -0.6
Lims1Q99JW4 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Atxn7l1os2-201ENSMUST00000138617 2019 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm37827-201ENSMUST00000194486 1542 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm13492-201ENSMUST00000119772 665 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm11751-201ENSMUST00000126187 460 ntTSL 3 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm8018-201ENSMUST00000173536 789 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 AC152453.1-201ENSMUST00000218802 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 AC167013.1-201ENSMUST00000228592 202 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Pde10a-202ENSMUST00000089085 7717 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm43760-201ENSMUST00000202120 3015 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 AC110816.2-201ENSMUST00000220360 1323 ntTSL 5 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Cyth3-202ENSMUST00000116456 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 Gm15897-201ENSMUST00000117770 1486 ntBASIC11.32□□□□□ -0.6
Lims1Q99JW4 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
Lims1Q99JW4 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Hk3-202ENSMUST00000123097 2896 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Taf1b-201ENSMUST00000075954 2209 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Oprm1-229ENSMUST00000152674 1179 ntTSL 3 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Mir7085-201ENSMUST00000184353 66 ntBASIC11.31□□□□□ -0.6
Lims1Q99JW4 Gm27486-201ENSMUST00000184923 80 ntBASIC11.31□□□□□ -0.6
Lims1Q99JW4 AY702102-202ENSMUST00000194651 1173 ntBASIC11.31□□□□□ -0.6
Lims1Q99JW4 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 AC153974.2-201ENSMUST00000218577 1025 ntBASIC11.31□□□□□ -0.6
Lims1Q99JW4 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Lims1Q99JW4 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.6 ms