Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 Stt3b-201ENSMUST00000035010 4221 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 Stag1-206ENSMUST00000129269 6186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Usp47Q8BY87 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gpr45-201ENSMUST00000114761 1546 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Tmem50a-202ENSMUST00000105863 719 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm16481-201ENSMUST00000119074 1227 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Mir5132-201ENSMUST00000175166 71 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm27627-201ENSMUST00000183644 150 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm29615-201ENSMUST00000185371 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28224-201ENSMUST00000186078 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm29001-201ENSMUST00000186177 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28292-201ENSMUST00000186593 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28101-201ENSMUST00000187608 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm29076-201ENSMUST00000187689 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28302-201ENSMUST00000187931 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28646-201ENSMUST00000188220 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28205-201ENSMUST00000189177 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm29032-201ENSMUST00000189797 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28695-201ENSMUST00000190300 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm37448-201ENSMUST00000192795 697 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm44711-201ENSMUST00000205414 1264 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 AC125108.1-201ENSMUST00000218986 2330 ntBASIC17.44■□□□□ 0.38
Usp47Q8BY87 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Sgo2a-201ENSMUST00000027202 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Rcsd1-202ENSMUST00000097474 5001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Srsf10-205ENSMUST00000126641 3754 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Usp47Q8BY87 Fam13c-202ENSMUST00000105436 3380 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Gm43068-201ENSMUST00000201095 1273 ntBASIC17.43■□□□□ 0.38
Usp47Q8BY87 CT025694.1-201ENSMUST00000226188 934 ntBASIC17.43■□□□□ 0.38
Usp47Q8BY87 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Gm45871-202ENSMUST00000209969 1368 ntTSL 5 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Foxj2-202ENSMUST00000177927 4620 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Usp47Q8BY87 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Pcdh8-201ENSMUST00000039568 4000 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Lbr-201ENSMUST00000005003 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm23912-201ENSMUST00000104687 87 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm4909-201ENSMUST00000118749 794 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm27552-201ENSMUST00000183351 62 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm27844-201ENSMUST00000183613 62 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm45484-201ENSMUST00000210310 1141 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm17827-201ENSMUST00000211825 742 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Abhd14b-210ENSMUST00000217496 631 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 CT571245.2-201ENSMUST00000218421 305 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 AC171277.1-201ENSMUST00000216902 1441 ntBASIC17.42■□□□□ 0.38
Usp47Q8BY87 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Senp5-201ENSMUST00000023457 3498 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Ttc25-202ENSMUST00000092684 2240 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Ehd1-201ENSMUST00000025684 3353 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Usp47Q8BY87 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms