Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 AC123857.2-201ENSMUST00000225756 1582 ntBASIC14.63□□□□□ -0.07
Trim56Q80VI1 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Scn4b-201ENSMUST00000060125 4982 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Arhgap26-201ENSMUST00000097593 7898 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Oit3-201ENSMUST00000009798 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Gm44124-201ENSMUST00000204159 472 ntBASIC14.62□□□□□ -0.07
Trim56Q80VI1 Gm7293-201ENSMUST00000216682 1007 ntBASIC14.62□□□□□ -0.07
Trim56Q80VI1 Gm32635-201ENSMUST00000221493 1162 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Add2-203ENSMUST00000203279 1454 ntTSL 2 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 A730020E08Rik-201ENSMUST00000180421 3387 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Trim56Q80VI1 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Gm9361-201ENSMUST00000198695 1507 ntBASIC14.61□□□□□ -0.07
Trim56Q80VI1 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Gm7224-201ENSMUST00000121359 2066 ntBASIC14.61□□□□□ -0.07
Trim56Q80VI1 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Dpm2-203ENSMUST00000140592 1412 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Dnase1l1-203ENSMUST00000114189 755 ntTSL 3 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Zscan10-203ENSMUST00000117606 891 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Rpl36-ps4-201ENSMUST00000179601 354 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Gm44882-201ENSMUST00000205702 802 ntBASIC14.61□□□□□ -0.07
Trim56Q80VI1 1700011D18Rik-201ENSMUST00000205762 277 ntBASIC14.61□□□□□ -0.07
Trim56Q80VI1 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Olfr117-201ENSMUST00000073636 954 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Olfr130-201ENSMUST00000087129 954 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Armcx2-201ENSMUST00000035559 3384 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Ephb1-202ENSMUST00000085169 4101 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Ap5b1-201ENSMUST00000096318 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Coasy-202ENSMUST00000107308 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Plcxd3-201ENSMUST00000061925 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Tcf4-254ENSMUST00000202674 2615 ntTSL 5 BASIC14.61□□□□□ -0.07
Trim56Q80VI1 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Trim56Q80VI1 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Kdelr1-205ENSMUST00000211716 1350 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Uap1l1-201ENSMUST00000102925 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Trim56Q80VI1 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 48.7 ms