Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 AC069562.3-201ENSMUST00000225387 587 ntBASIC13.73□□□□□ -0.21
Ift88Q61371 Ifitm3-201ENSMUST00000026565 678 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC13.73□□□□□ -0.21
Ift88Q61371 Misp-202ENSMUST00000169041 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
Ift88Q61371 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.73□□□□□ -0.21
Ift88Q61371 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC13.73□□□□□ -0.21
Ift88Q61371 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
Ift88Q61371 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC13.73□□□□□ -0.21
Ift88Q61371 Cmtm6-201ENSMUST00000035007 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC13.72□□□□□ -0.21
Ift88Q61371 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Saxo1-201ENSMUST00000030216 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Dync1i1-202ENSMUST00000115555 2669 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC13.72□□□□□ -0.21
Ift88Q61371 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
Ift88Q61371 Mup-ps23-201ENSMUST00000118063 630 ntBASIC13.72□□□□□ -0.21
Ift88Q61371 2410080I02Rik-201ENSMUST00000142712 414 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC13.72□□□□□ -0.21
Ift88Q61371 Gm7029-201ENSMUST00000173226 450 ntBASIC13.72□□□□□ -0.21
Ift88Q61371 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Zfp709-202ENSMUST00000188374 717 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Gm44882-201ENSMUST00000205702 802 ntBASIC13.72□□□□□ -0.21
Ift88Q61371 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 AC167013.1-201ENSMUST00000228592 202 ntBASIC13.72□□□□□ -0.21
Ift88Q61371 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Rps15-201ENSMUST00000062674 572 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Srrt-212ENSMUST00000199243 2988 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Ppp2r1b-202ENSMUST00000114437 3430 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Prc1-206ENSMUST00000173824 2912 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC13.72□□□□□ -0.21
Ift88Q61371 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
Ift88Q61371 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
Ift88Q61371 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
Ift88Q61371 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Hdac5-204ENSMUST00000107152 3788 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Gm9361-201ENSMUST00000198695 1507 ntBASIC13.71□□□□□ -0.21
Ift88Q61371 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Gm13492-201ENSMUST00000119772 665 ntBASIC13.71□□□□□ -0.21
Ift88Q61371 D930015M05Rik-201ENSMUST00000126002 1190 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC13.71□□□□□ -0.21
Ift88Q61371 Gm24644-201ENSMUST00000157114 139 ntBASIC13.71□□□□□ -0.21
Ift88Q61371 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC13.71□□□□□ -0.21
Ift88Q61371 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
Ift88Q61371 Ighv8-4-201ENSMUST00000178949 294 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
Ift88Q61371 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC13.71□□□□□ -0.21
Ift88Q61371 Gm27243-201ENSMUST00000183964 521 ntBASIC13.71□□□□□ -0.21
Ift88Q61371 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC13.71□□□□□ -0.21
Ift88Q61371 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC13.71□□□□□ -0.21
Ift88Q61371 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
Ift88Q61371 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC13.71□□□□□ -0.21
Ift88Q61371 Dnmt1-203ENSMUST00000178110 5870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Ift88Q61371 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ift88Q61371 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
Ift88Q61371 Prkcsh-201ENSMUST00000003493 2012 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ift88Q61371 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ift88Q61371 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
Ift88Q61371 Gm8228-201ENSMUST00000189949 2192 ntBASIC13.71□□□□□ -0.22
Ift88Q61371 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
Ift88Q61371 Fnbp1-202ENSMUST00000075326 1761 ntTSL 5 BASIC13.71□□□□□ -0.22
Ift88Q61371 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC13.71□□□□□ -0.22
Ift88Q61371 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
Ift88Q61371 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms