Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Cwc27-201ENSMUST00000022228 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Dnajc16-201ENSMUST00000038014 5969 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Skp2-203ENSMUST00000190131 1819 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Rhox7-ps1-201ENSMUST00000117595 806 ntBASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm15351-201ENSMUST00000123920 419 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm38266-201ENSMUST00000194931 421 ntBASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm5950-201ENSMUST00000213337 772 ntBASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm17189-201ENSMUST00000163707 1630 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Phyhd1-202ENSMUST00000091132 1353 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Mapk3-203ENSMUST00000091328 1716 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Gm45743-201ENSMUST00000212701 2795 ntBASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Upf3bQ3ULL6 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Wdfy2-201ENSMUST00000014691 6646 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Klk2-ps-202ENSMUST00000206865 2684 ntTSL 5 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Nfkb2-202ENSMUST00000111881 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Rita1-207ENSMUST00000177800 1668 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm11531-201ENSMUST00000117614 555 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm13563-201ENSMUST00000125518 643 ntTSL 3 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm13570-201ENSMUST00000140763 309 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm25043-201ENSMUST00000158604 212 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm2991-201ENSMUST00000173338 480 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm27017-201ENSMUST00000183031 656 ntTSL 3 BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Mir8109-201ENSMUST00000184375 117 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm17383-201ENSMUST00000078739 1041 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm24136-201ENSMUST00000083374 165 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Rab17-201ENSMUST00000027529 1831 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Ttpa-203ENSMUST00000121491 2862 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Gm5884-201ENSMUST00000036712 1479 ntBASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Upf3bQ3ULL6 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Armcx1-201ENSMUST00000035748 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 A930009A15Rik-201ENSMUST00000173620 1001 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm26956-201ENSMUST00000182176 986 ntBASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm6621-201ENSMUST00000193251 772 ntBASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm6334-201ENSMUST00000207083 228 ntBASIC13.28□□□□□ -0.28
Upf3bQ3ULL6 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms