Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Pik3cd-205ENSMUST00000118704 4894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Gm10051-201ENSMUST00000145209 414 ntBASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 CT009713.8-201ENSMUST00000225448 560 ntBASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Xrra1-201ENSMUST00000036155 2731 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Pdpk1-204ENSMUST00000115409 4623 ntTSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Plxnb2-202ENSMUST00000109331 6377 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Lgals12-202ENSMUST00000099729 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Nwd2-201ENSMUST00000159584 8534 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Acin1-216ENSMUST00000141453 2381 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 5730409E04Rik-201ENSMUST00000097886 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Clstn2-202ENSMUST00000162295 4174 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Kcnd3-203ENSMUST00000118360 2668 ntAPPRIS P4 TSL 5 BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Upf3aQ3ULJ3 Sv2c-203ENSMUST00000182289 2197 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Olfr279-202ENSMUST00000205772 5330 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Twf1-201ENSMUST00000023087 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gpd2-207ENSMUST00000169687 5745 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Glud1-201ENSMUST00000022322 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Lzts1-204ENSMUST00000185176 5019 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Lrrfip2-213ENSMUST00000216430 1525 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gm17099-201ENSMUST00000166780 412 ntTSL 3 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gm44126-201ENSMUST00000204831 514 ntBASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 AC154849.4-201ENSMUST00000224868 365 ntBASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gm1821-202ENSMUST00000227415 750 ntBASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Rpl17-201ENSMUST00000079716 775 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Trim52-201ENSMUST00000022708 3075 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Tectb-202ENSMUST00000120936 1349 ntTSL 5 BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Pxdn-202ENSMUST00000122328 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Cd247-201ENSMUST00000005907 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Igf2-201ENSMUST00000000033 3708 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Gm5939-201ENSMUST00000119613 2874 ntBASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Astl-202ENSMUST00000089673 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Upf3aQ3ULJ3 Il1rapl2-202ENSMUST00000113063 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Dysf-213ENSMUST00000203803 6590 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Hid1-201ENSMUST00000044152 3236 ntAPPRIS ALT1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Polr2a-202ENSMUST00000071213 5799 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Dhx37-201ENSMUST00000169485 4760 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Nup98-206ENSMUST00000211235 3748 ntTSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm7030-202ENSMUST00000172968 899 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Trmt112-204ENSMUST00000174786 646 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm19459-201ENSMUST00000176240 835 ntBASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Upf3aQ3ULJ3 Gm5733-201ENSMUST00000190232 939 ntBASIC13.04□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms