Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm43179-201ENSMUST00000198797 275 ntBASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm36634-201ENSMUST00000218356 1259 ntTSL 3 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 AC132317.1-201ENSMUST00000227227 962 ntBASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Hcfc1r1-201ENSMUST00000024697 946 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Nlrx1-202ENSMUST00000168499 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Rnf214-205ENSMUST00000160699 2287 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Adcyap1r1-208ENSMUST00000172084 1344 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Traf3ip2-201ENSMUST00000019987 2867 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Gm18227-201ENSMUST00000211082 1468 ntBASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Col28a1Q2UY11 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Ldha-214ENSMUST00000210815 1535 ntTSL 5 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Vps33b-201ENSMUST00000032749 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm18983-201ENSMUST00000222884 2729 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Glrx2-202ENSMUST00000111957 580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm14760-201ENSMUST00000121831 999 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm8565-201ENSMUST00000183259 1014 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm29152-201ENSMUST00000189284 325 ntTSL 5 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm38671-201ENSMUST00000200573 130 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm44069-201ENSMUST00000204898 506 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm40466-201ENSMUST00000212174 422 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Rdh5-201ENSMUST00000026406 1258 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Ppil3-201ENSMUST00000081677 896 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Mir339-201ENSMUST00000083659 96 ntBASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Pde9a-201ENSMUST00000047168 2065 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Col28a1Q2UY11 Dcaf11-203ENSMUST00000117701 2311 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Tbc1d1-204ENSMUST00000121370 5419 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Gm36445-201ENSMUST00000209344 1432 ntTSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Drap1-210ENSMUST00000148219 727 ntTSL 3 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Abhd14b-202ENSMUST00000185347 1200 ntAPPRIS P1 TSL 3 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Gm9257-201ENSMUST00000221254 232 ntBASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Net1-207ENSMUST00000223258 597 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 AC126253.1-201ENSMUST00000227974 824 ntBASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Gm10012-201ENSMUST00000078252 192 ntBASIC12.06□□□□□ -0.48
Col28a1Q2UY11 AC154517.2-201ENSMUST00000220829 2458 ntBASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Lamb3-209ENSMUST00000194677 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Nup205-201ENSMUST00000043815 6412 ntAPPRIS P2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Gm4858-202ENSMUST00000194595 1810 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Col28a1Q2UY11 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms