Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Pmp22-202ENSMUST00000108700 733 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC18.79■□□□□ 0.6
Cux1P53564 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Cux1P53564 Gm15523-201ENSMUST00000160463 439 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Cfap73-201ENSMUST00000177908 921 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Cux1P53564 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Cux1P53564 Krtap6-2-201ENSMUST00000082065 786 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Cux1P53564 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
Cux1P53564 Hspa14-201ENSMUST00000027961 1795 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC18.79■□□□□ 0.6
Cux1P53564 Thumpd1-201ENSMUST00000033236 2689 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cux1P53564 Gm45779-201ENSMUST00000212189 4064 ntBASIC18.78■□□□□ 0.6
Cux1P53564 Gm17213-201ENSMUST00000165161 1360 ntBASIC18.78■□□□□ 0.6
Cux1P53564 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Cux1P53564 B3galnt2-201ENSMUST00000099747 3892 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC18.78■□□□□ 0.6
Cux1P53564 Acap1-201ENSMUST00000001631 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Cux1P53564 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Gm37348-201ENSMUST00000193104 1789 ntBASIC18.78■□□□□ 0.6
Cux1P53564 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC18.78■□□□□ 0.6
Cux1P53564 1700025F24Rik-201ENSMUST00000185238 894 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 1700018A23Rik-201ENSMUST00000201350 398 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Cux1P53564 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC18.78■□□□□ 0.6
Cux1P53564 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Cux1P53564 Mpzl2-201ENSMUST00000034600 3107 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cux1P53564 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Cux1P53564 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.6
Cux1P53564 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Cux1P53564 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC18.77■□□□□ 0.6
Cux1P53564 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC18.77■□□□□ 0.6
Cux1P53564 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Gm13668-201ENSMUST00000119237 1001 ntBASIC18.77■□□□□ 0.6
Cux1P53564 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Pcnp-203ENSMUST00000119981 901 ntTSL 3 BASIC18.77■□□□□ 0.6
Cux1P53564 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 1700122E12Rik-202ENSMUST00000147538 479 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Gm9192-201ENSMUST00000183221 985 ntBASIC18.77■□□□□ 0.6
Cux1P53564 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC18.77■□□□□ 0.6
Cux1P53564 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Cux1P53564 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Cux1P53564 Slc10a1-203ENSMUST00000218342 1411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cux1P53564 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Cux1P53564 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
Cux1P53564 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cux1P53564 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cux1P53564 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Cux1P53564 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC18.76■□□□□ 0.59
Cux1P53564 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cux1P53564 Aamdc-203ENSMUST00000124552 618 ntTSL 3 BASIC18.76■□□□□ 0.59
Cux1P53564 Vamp8-202ENSMUST00000142613 2076 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC18.76■□□□□ 0.59
Cux1P53564 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC18.76■□□□□ 0.59
Cux1P53564 Gm29155-201ENSMUST00000185910 269 ntBASIC18.76■□□□□ 0.59
Cux1P53564 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 AC159890.1-201ENSMUST00000215382 684 ntTSL 5 BASIC18.76■□□□□ 0.59
Cux1P53564 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Eps8l3-201ENSMUST00000037375 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Cux1P53564 Gm4950-201ENSMUST00000091905 618 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Cux1P53564 Tfap2c-202ENSMUST00000099058 2985 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Sacs-201ENSMUST00000089394 3345 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Mgat1-202ENSMUST00000101293 2729 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Arhgap25-202ENSMUST00000101197 2493 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC18.76■□□□□ 0.59
Cux1P53564 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Grm5-204ENSMUST00000155358 4500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cux1P53564 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cux1P53564 Lyplal1-201ENSMUST00000045388 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cux1P53564 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms