Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm17796-201ENSMUST00000189015 1213 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 Gm6606-201ENSMUST00000193613 947 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 AC169511.1-201ENSMUST00000227639 995 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Tomm6os-201ENSMUST00000155812 2944 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Tsku-207ENSMUST00000206414 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Ssh3-202ENSMUST00000113852 2735 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Ankrd6-204ENSMUST00000084750 4444 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
Col18a1P39061 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
Col18a1P39061 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Gm44260-201ENSMUST00000204946 2094 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 Gm4294-201ENSMUST00000105169 614 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 Fam3a-204ENSMUST00000114141 1243 ntTSL 5 BASIC16.03■□□□□ 0.16
Col18a1P39061 Syngr4-202ENSMUST00000120299 722 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Gm11417-201ENSMUST00000150536 920 ntTSL 2 BASIC16.03■□□□□ 0.16
Col18a1P39061 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC16.03■□□□□ 0.16
Col18a1P39061 Gm7741-201ENSMUST00000181445 989 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Gm5449-201ENSMUST00000081132 357 ntBASIC16.03■□□□□ 0.16
Col18a1P39061 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Col18a1P39061 Riox2-202ENSMUST00000120667 2200 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
Col18a1P39061 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 AC137950.2-202ENSMUST00000227150 1635 ntBASIC16.02■□□□□ 0.16
Col18a1P39061 Fam60a-201ENSMUST00000054080 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC16.02■□□□□ 0.16
Col18a1P39061 Pank1-201ENSMUST00000036584 3460 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Col18a1P39061 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC16.02■□□□□ 0.16
Col18a1P39061 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
Col18a1P39061 1700011M02Rik-201ENSMUST00000113602 420 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col18a1P39061 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC16.02■□□□□ 0.15
Col18a1P39061 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC16.02■□□□□ 0.15
Col18a1P39061 Ndufc1-204ENSMUST00000193279 315 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
Col18a1P39061 Rps2-ps12-201ENSMUST00000214262 785 ntBASIC16.02■□□□□ 0.15
Col18a1P39061 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col18a1P39061 AC134537.1-201ENSMUST00000219205 265 ntBASIC16.02■□□□□ 0.15
Col18a1P39061 AC105408.1-201ENSMUST00000227771 802 ntBASIC16.02■□□□□ 0.15
Col18a1P39061 Ebi3-201ENSMUST00000003274 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col18a1P39061 Atp5j2-201ENSMUST00000037056 540 ntTSL 5 BASIC16.02■□□□□ 0.15
Col18a1P39061 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC16.02■□□□□ 0.15
Col18a1P39061 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col18a1P39061 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col18a1P39061 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
Col18a1P39061 Gm6641-201ENSMUST00000196100 1315 ntBASIC16.02■□□□□ 0.15
Col18a1P39061 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Gm8146-201ENSMUST00000192106 1847 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Gm13347-201ENSMUST00000120298 1353 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Akr1b8-201ENSMUST00000038406 1358 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
Col18a1P39061 Hps1-208ENSMUST00000162004 2847 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Mir744-201ENSMUST00000103261 100 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Art5-203ENSMUST00000106935 495 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Gm13700-201ENSMUST00000118624 1128 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Gm12461-201ENSMUST00000120231 1239 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Gm24943-201ENSMUST00000158329 433 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Ighv1-86-201ENSMUST00000200562 353 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Gm45481-201ENSMUST00000209717 877 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Gm4930-201ENSMUST00000219926 1087 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Tnfrsf18-201ENSMUST00000040274 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC16.01■□□□□ 0.15
Col18a1P39061 Tex101-201ENSMUST00000078001 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Lpar1-201ENSMUST00000055018 3512 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Gm14005-210ENSMUST00000225087 1413 ntBASIC16.01■□□□□ 0.15
Col18a1P39061 Kars-203ENSMUST00000164470 2189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Magea2-202ENSMUST00000112559 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Col18a1P39061 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Sipa1-201ENSMUST00000071857 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Col18a1P39061 Ighv7-1-201ENSMUST00000103474 363 ntAPPRIS P1 BASIC16■□□□□ 0.15
Col18a1P39061 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gm13171-201ENSMUST00000117233 391 ntBASIC16■□□□□ 0.15
Col18a1P39061 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gm5982-201ENSMUST00000196234 512 ntBASIC16■□□□□ 0.15
Col18a1P39061 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC16■□□□□ 0.15
Col18a1P39061 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC16■□□□□ 0.15
Col18a1P39061 Mrpl33-201ENSMUST00000031024 478 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Rps3a2-201ENSMUST00000074245 792 ntBASIC16■□□□□ 0.15
Col18a1P39061 Rps3a3-201ENSMUST00000074680 795 ntBASIC16■□□□□ 0.15
Col18a1P39061 Olfr60-201ENSMUST00000075470 936 ntAPPRIS P1 BASIC16■□□□□ 0.15
Col18a1P39061 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Col18a1P39061 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms