Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 BC027072-201ENSMUST00000057405 5004 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm44942-201ENSMUST00000096093 2072 ntBASIC10.08□□□□□ -0.8
Cdx1P18111 Thg1l-201ENSMUST00000011398 2250 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Cdx1P18111 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC10.08□□□□□ -0.8
Cdx1P18111 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Rassf8-201ENSMUST00000032388 1733 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Gm42690-201ENSMUST00000197921 1836 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Cep295nl-201ENSMUST00000103024 1944 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Vps29-208ENSMUST00000155671 2716 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Cdx1P18111 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC10.07□□□□□ -0.8
Cdx1P18111 Stxbp1-202ENSMUST00000077458 3616 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Sp4-201ENSMUST00000026367 5694 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Jak3-202ENSMUST00000110012 3774 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
Cdx1P18111 Tceal8-204ENSMUST00000163584 2358 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
Cdx1P18111 CT009713.10-201ENSMUST00000225013 1986 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Gm5466-201ENSMUST00000119395 1890 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 AC139350.1-201ENSMUST00000227064 1594 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Pcdhga3-201ENSMUST00000073447 4720 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Plod1-202ENSMUST00000105712 1059 ntTSL 2 BASIC10.07□□□□□ -0.8
Cdx1P18111 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Gm14224-201ENSMUST00000147187 864 ntTSL 3 BASIC10.07□□□□□ -0.8
Cdx1P18111 Tnnt1-208ENSMUST00000166161 750 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 AY702102-202ENSMUST00000194651 1173 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC10.07□□□□□ -0.8
Cdx1P18111 Gm18905-201ENSMUST00000205454 928 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Med10-201ENSMUST00000022089 913 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 CT030704.2-201ENSMUST00000228887 494 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Duoxa1-201ENSMUST00000028653 1026 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
Cdx1P18111 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Sel1l-210ENSMUST00000178462 6150 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Trim35-201ENSMUST00000022623 3678 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Arhgef2-207ENSMUST00000175903 3356 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC10.07□□□□□ -0.8
Cdx1P18111 Spidr-201ENSMUST00000040248 3279 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Sorcs1-202ENSMUST00000111756 3617 ntAPPRIS ALT1 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Sorcs1-207ENSMUST00000211008 3617 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Grip1-216ENSMUST00000154238 2482 ntTSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Cd300lg-201ENSMUST00000017453 2353 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Slc35a4-202ENSMUST00000050476 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Micalcl-201ENSMUST00000033033 2259 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Catsper3-202ENSMUST00000109898 1311 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 4933415J04Rik-201ENSMUST00000195895 1301 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Gm45677-201ENSMUST00000209975 1341 ntBASIC10.07□□□□□ -0.8
Cdx1P18111 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
Cdx1P18111 Cutal-201ENSMUST00000028228 2179 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Cdx1P18111 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC10.06□□□□□ -0.8
Cdx1P18111 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC10.06□□□□□ -0.8
Cdx1P18111 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Nlrp6-203ENSMUST00000183845 4436 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC10.06□□□□□ -0.8
Cdx1P18111 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Cdx1P18111 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Sirt4-201ENSMUST00000112066 1794 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC10.06□□□□□ -0.8
Cdx1P18111 Lox-201ENSMUST00000025409 3604 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Ugt1a10-201ENSMUST00000113142 2244 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Cdx1P18111 Bpifa6-201ENSMUST00000109753 1572 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms