Protein–RNA interactions for Protein: A0A075B656

Trav18, T cell receptor alpha variable 18 (Fragment), mousemouse

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav18A0A075B656 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Fuca2-201ENSMUST00000060212 2007 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Fndc3b-201ENSMUST00000046157 6875 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 AC166574.4-201ENSMUST00000227165 1937 ntBASIC10.19□□□□□ -0.78
Trav18A0A075B656 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Gm43823-201ENSMUST00000197391 1808 ntBASIC10.19□□□□□ -0.78
Trav18A0A075B656 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Map1b-203ENSMUST00000223725 2669 ntBASIC10.19□□□□□ -0.78
Trav18A0A075B656 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
Trav18A0A075B656 Smarcd2-203ENSMUST00000106843 2548 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Lhx6-201ENSMUST00000112960 3345 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm8038-201ENSMUST00000164674 2044 ntBASIC10.18□□□□□ -0.78
Trav18A0A075B656 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Rnf43-203ENSMUST00000121782 2640 ntTSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Ighv5-13-201ENSMUST00000193550 290 ntBASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm38092-201ENSMUST00000195600 653 ntBASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm24526-201ENSMUST00000082921 158 ntBASIC10.18□□□□□ -0.78
Trav18A0A075B656 Smim1-213ENSMUST00000182151 5091 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 AC154517.2-201ENSMUST00000220829 2458 ntBASIC10.18□□□□□ -0.78
Trav18A0A075B656 Cdh7-202ENSMUST00000112701 4945 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Lgr5-201ENSMUST00000020350 4714 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Trav18A0A075B656 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC10.17□□□□□ -0.78
Trav18A0A075B656 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 BC025446-201ENSMUST00000055719 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 4732471J01Rik-204ENSMUST00000206436 2430 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Skp1a-201ENSMUST00000037324 1440 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Cldn9-201ENSMUST00000085989 1435 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Ankrd42-201ENSMUST00000056106 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Hsd17b6-201ENSMUST00000026462 1392 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Ska3-201ENSMUST00000022536 2260 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Gabbr1-203ENSMUST00000172792 4036 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Zscan22-201ENSMUST00000055528 2620 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 A530016L24Rik-201ENSMUST00000057465 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Paupar-201ENSMUST00000194826 3482 ntBASIC10.17□□□□□ -0.78
Trav18A0A075B656 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Mup-ps23-201ENSMUST00000118063 630 ntBASIC10.17□□□□□ -0.78
Trav18A0A075B656 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC10.17□□□□□ -0.78
Trav18A0A075B656 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC10.17□□□□□ -0.78
Trav18A0A075B656 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms