Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Galnt17-201ENSMUST00000086023 8040 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Trim56Q80VI1 Adcyap1r1-202ENSMUST00000070756 6107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Nme8-202ENSMUST00000091763 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gm10782-202ENSMUST00000223775 1480 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gm14644-201ENSMUST00000116671 647 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gm14809-201ENSMUST00000152025 695 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gm37388-201ENSMUST00000193984 429 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Calml4-207ENSMUST00000215968 526 ntTSL 2 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 AC153974.2-201ENSMUST00000218577 1025 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Dhrs4-202ENSMUST00000226168 828 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Gm9996-201ENSMUST00000070359 913 ntBASIC14.65□□□□□ -0.06
Trim56Q80VI1 Clec4b2-201ENSMUST00000088455 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.65□□□□□ -0.06
Trim56Q80VI1 Zmym4-201ENSMUST00000106108 7102 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.07
Trim56Q80VI1 Usp5-202ENSMUST00000122110 3076 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Prss42-201ENSMUST00000035715 1584 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Ubqln5-201ENSMUST00000053743 1915 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Mest-202ENSMUST00000124665 2665 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Srms-201ENSMUST00000016498 2562 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Mir877-201ENSMUST00000104738 85 ntBASIC14.64□□□□□ -0.07
Trim56Q80VI1 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm15276-201ENSMUST00000145953 498 ntBASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm25700-201ENSMUST00000177693 110 ntBASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm26602-201ENSMUST00000181321 285 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC14.64□□□□□ -0.07
Trim56Q80VI1 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Podn-202ENSMUST00000106708 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Ehbp1l1-201ENSMUST00000049295 6404 ntAPPRIS P4 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Ip6k3-201ENSMUST00000025046 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Opa1-206ENSMUST00000160597 6230 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Trim56Q80VI1 Gm45495-201ENSMUST00000200940 1700 ntBASIC14.63□□□□□ -0.07
Trim56Q80VI1 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Pgap2-204ENSMUST00000120879 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Tbc1d4-209ENSMUST00000161991 6483 ntAPPRIS P2 TSL 5 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 AC160405.1-201ENSMUST00000218207 1545 ntBASIC14.63□□□□□ -0.07
Trim56Q80VI1 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Tcf7l2-205ENSMUST00000111651 1127 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Ccdc28a-203ENSMUST00000173243 590 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Gm5869-201ENSMUST00000200248 1257 ntBASIC14.63□□□□□ -0.07
Trim56Q80VI1 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.63□□□□□ -0.07
Trim56Q80VI1 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Trim56Q80VI1 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
Trim56Q80VI1 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 64.7 ms