Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Upf3bQ3ULL6 Gm18222-201ENSMUST00000202416 1387 ntBASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Fam214b-205ENSMUST00000107959 3060 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Fam214b-201ENSMUST00000036462 3074 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Zhx2-201ENSMUST00000096430 4376 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Gm5637-201ENSMUST00000153890 1119 ntBASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Gm18304-201ENSMUST00000189162 546 ntBASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Crip2-202ENSMUST00000196015 772 ntTSL 3 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 AC126262.1-201ENSMUST00000221802 1904 ntBASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Treh-202ENSMUST00000071219 1927 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Upf3bQ3ULL6 Gm2673-201ENSMUST00000120958 1608 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Cd200r1-201ENSMUST00000057488 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm2420-201ENSMUST00000119864 2149 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Pcdhga9-201ENSMUST00000091935 4724 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Syvn1-204ENSMUST00000138532 3464 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm26685-201ENSMUST00000181831 2023 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Ssh1-202ENSMUST00000112298 5584 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm14999-201ENSMUST00000121039 624 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Anapc16-205ENSMUST00000182912 566 ntTSL 2 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm44127-201ENSMUST00000203565 291 ntTSL 3 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 AC159896.2-201ENSMUST00000214753 269 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 AC154319.1-201ENSMUST00000216330 312 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm39404-201ENSMUST00000216350 313 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 AL589735.1-201ENSMUST00000224353 270 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Ggact-201ENSMUST00000038075 1076 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Gm11661-201ENSMUST00000121761 1327 ntBASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Tmtc3-201ENSMUST00000058154 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Dgkg-201ENSMUST00000023578 2725 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Upf3bQ3ULL6 Mid1-215ENSMUST00000171433 2546 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 79.5 ms