Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Nfatc2-202ENSMUST00000074618 6637 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Aff4-201ENSMUST00000060945 10099 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Aacs-201ENSMUST00000031445 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Nrxn1-207ENSMUST00000160844 9309 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
Col6a1Q04857 Ccdc162-203ENSMUST00000099932 2742 ntTSL 5 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Gm43273-201ENSMUST00000199649 2594 ntBASIC13.77□□□□□ -0.21
Col6a1Q04857 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC13.77□□□□□ -0.21
Col6a1Q04857 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 5330426L24Rik-201ENSMUST00000200008 2175 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 Prkce-202ENSMUST00000097275 6254 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 BB123696-201ENSMUST00000222580 2056 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Nbeal2-210ENSMUST00000167320 8803 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm6992-201ENSMUST00000217973 1607 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 Asic3-202ENSMUST00000196296 1593 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Fetub-201ENSMUST00000023587 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Cnot3-201ENSMUST00000038913 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ubap2l-202ENSMUST00000064639 4073 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Kif1c-202ENSMUST00000094499 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm12795-201ENSMUST00000117594 539 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm15711-201ENSMUST00000118889 535 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC13.76□□□□□ -0.21
Col6a1Q04857 4930538E20Rik-202ENSMUST00000146717 497 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm16251-201ENSMUST00000162649 338 ntTSL 3 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Scgb1b19-201ENSMUST00000165813 418 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Scgb1b3-201ENSMUST00000179481 419 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm27627-201ENSMUST00000183644 150 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ddo-207ENSMUST00000216830 806 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 AC153937.1-201ENSMUST00000218734 412 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm40576-201ENSMUST00000221773 1152 ntTSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Med27-201ENSMUST00000028139 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Rsg1-201ENSMUST00000097813 985 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Pcdhgc3-201ENSMUST00000076807 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 AC159308.2-201ENSMUST00000213592 2325 ntBASIC13.76□□□□□ -0.21
Col6a1Q04857 2310007B03Rik-201ENSMUST00000043718 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Gnaz-202ENSMUST00000159991 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Inpp4b-215ENSMUST00000217122 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Sema7a-201ENSMUST00000043059 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Rab39-201ENSMUST00000068449 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Ncor2-205ENSMUST00000111398 8808 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
Col6a1Q04857 Lrrc8e-201ENSMUST00000053035 3878 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Pcdhgb8-202ENSMUST00000208907 2796 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 B230369F24Rik-201ENSMUST00000141846 2560 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
Col6a1Q04857 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Lgals12-203ENSMUST00000159983 2470 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Zfp422-202ENSMUST00000079749 3187 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Spon1-201ENSMUST00000046687 6161 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Cyp4x1-201ENSMUST00000051400 1524 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Slc6a8-201ENSMUST00000033752 3964 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm13035-201ENSMUST00000117496 342 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm5616-201ENSMUST00000165252 384 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm8741-201ENSMUST00000174736 384 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm38210-201ENSMUST00000191944 809 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm43356-201ENSMUST00000196582 609 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 AC124457.1-201ENSMUST00000198845 120 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm45550-201ENSMUST00000209380 946 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Cbx3-ps8-201ENSMUST00000214564 548 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 AC159205.5-202ENSMUST00000224849 386 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 AC099645.1-201ENSMUST00000226476 1105 ntBASIC13.75□□□□□ -0.21
Col6a1Q04857 Cbx1-202ENSMUST00000079702 912 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Etv1-211ENSMUST00000162563 1865 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 G2e3-201ENSMUST00000054308 6803 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Lgals8-203ENSMUST00000124888 2843 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Daw1-201ENSMUST00000065403 1651 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Rgp1-202ENSMUST00000107886 5888 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
Col6a1Q04857 Acoxl-202ENSMUST00000110344 1573 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Noxa1-202ENSMUST00000114373 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
Col6a1Q04857 Gm5385-201ENSMUST00000118988 1559 ntBASIC13.75□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 69 ms