Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm5884-201ENSMUST00000036712 1479 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Rmrp-201ENSMUST00000157463 271 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm22334-201ENSMUST00000158070 133 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm17040-202ENSMUST00000170597 889 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm8494-201ENSMUST00000178171 1233 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm29615-201ENSMUST00000185371 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28224-201ENSMUST00000186078 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm29001-201ENSMUST00000186177 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28292-201ENSMUST00000186593 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28101-201ENSMUST00000187608 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm29076-201ENSMUST00000187689 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28302-201ENSMUST00000187931 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28646-201ENSMUST00000188220 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28205-201ENSMUST00000189177 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm29032-201ENSMUST00000189797 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm28695-201ENSMUST00000190300 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm37448-201ENSMUST00000192795 697 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm19187-201ENSMUST00000206781 892 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 AL732506.1-201ENSMUST00000226420 281 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Rps15-202ENSMUST00000068408 500 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Phrf1-201ENSMUST00000106027 5248 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Mdm2-201ENSMUST00000020408 3099 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Dnmbp-202ENSMUST00000212032 5074 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Dlgap1-208ENSMUST00000135938 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm27194-201ENSMUST00000175753 2936 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Cyp4f39-201ENSMUST00000003413 1599 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Ddx46-202ENSMUST00000172272 5676 ntAPPRIS P2 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Ddx46-201ENSMUST00000099479 5664 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Gm43570-201ENSMUST00000199951 3688 ntBASIC10.77□□□□□ -0.69
Nkx3-1P97436 Zer1-202ENSMUST00000113677 4189 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Nkx3-1P97436 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC10.76□□□□□ -0.69
Nkx3-1P97436 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Mark2-215ENSMUST00000168872 2124 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 March7-203ENSMUST00000102748 3594 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Dcun1d3-201ENSMUST00000059851 5985 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Trappc2l-201ENSMUST00000015157 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Lpcat1-201ENSMUST00000022099 3675 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Tfdp2-203ENSMUST00000165768 2212 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Tigd2-201ENSMUST00000062626 3007 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Pqlc2-202ENSMUST00000105801 2756 ntAPPRIS ALT2 TSL 2 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Gm11568-201ENSMUST00000107434 1145 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Pmp22-203ENSMUST00000108701 723 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Gm14644-201ENSMUST00000116671 647 ntBASIC10.76□□□□□ -0.69
Nkx3-1P97436 Dusp13-204ENSMUST00000120984 976 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Gm12690-201ENSMUST00000132108 354 ntTSL 3 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Nr1h2-ps-201ENSMUST00000183844 478 ntBASIC10.76□□□□□ -0.69
Nkx3-1P97436 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Hlf-201ENSMUST00000004051 5642 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Otx2-209ENSMUST00000226501 2592 ntAPPRIS P1 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Zfp853-202ENSMUST00000212355 2871 ntAPPRIS P5 TSL 5 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Evi5l-202ENSMUST00000176072 3932 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Sh2b1-206ENSMUST00000205889 3011 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Rnf19b-202ENSMUST00000097874 1992 ntTSL 5 BASIC10.76□□□□□ -0.69
Nkx3-1P97436 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms