Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Gm43240-201ENSMUST00000198543 630 ntTSL 3 BASIC14.84□□□□□ -0.03
Rfx1P48377 Gm38671-201ENSMUST00000200573 130 ntBASIC14.84□□□□□ -0.03
Rfx1P48377 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 AC161424.1-202ENSMUST00000213570 767 ntTSL 3 BASIC14.84□□□□□ -0.03
Rfx1P48377 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Txn1-201ENSMUST00000030051 1051 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Bcdin3d-201ENSMUST00000040313 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Gm2423-201ENSMUST00000074863 733 ntBASIC14.84□□□□□ -0.03
Rfx1P48377 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Rfx1P48377 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Ccdc94-201ENSMUST00000086869 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Sgcb-201ENSMUST00000081170 3786 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Pnoc-202ENSMUST00000224594 1388 ntAPPRIS ALT2 BASIC14.84□□□□□ -0.03
Rfx1P48377 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
Rfx1P48377 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Stxbp6-202ENSMUST00000120531 4209 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Acoxl-201ENSMUST00000028859 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Rfx1P48377 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC14.83□□□□□ -0.03
Rfx1P48377 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Rfx1P48377 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
Rfx1P48377 Gm36266-201ENSMUST00000196660 1749 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Rfx1P48377 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC14.83□□□□□ -0.03
Rfx1P48377 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC14.83□□□□□ -0.03
Rfx1P48377 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC14.83□□□□□ -0.03
Rfx1P48377 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Rfx1P48377 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Rfx1P48377 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Rfx1P48377 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Cox4i2-201ENSMUST00000010020 727 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Rfx1P48377 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Gm16296-201ENSMUST00000159905 325 ntBASIC14.83□□□□□ -0.04
Rfx1P48377 Fbxw4-204ENSMUST00000160018 931 ntTSL 3 BASIC14.83□□□□□ -0.04
Rfx1P48377 Prss55-203ENSMUST00000171503 1074 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 2010015M23Rik-201ENSMUST00000181900 1199 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Cryaa-201ENSMUST00000019192 1176 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Gm8463-201ENSMUST00000208573 613 ntBASIC14.83□□□□□ -0.04
Rfx1P48377 Sct-204ENSMUST00000211667 506 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
Rfx1P48377 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC14.83□□□□□ -0.04
Rfx1P48377 Atp5d-201ENSMUST00000003156 931 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Asb13-201ENSMUST00000042288 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Epm2aip1-202ENSMUST00000135807 4245 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
Rfx1P48377 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 AC160410.1-201ENSMUST00000219298 1972 ntBASIC14.83□□□□□ -0.04
Rfx1P48377 1110028F18Rik-201ENSMUST00000183365 1341 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Eif4g1-217ENSMUST00000143939 5114 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Rfx1P48377 Ctr9-201ENSMUST00000005749 4300 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Rfx1P48377 Trim34b-201ENSMUST00000106847 1827 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Rnf26-205ENSMUST00000215685 1804 ntTSL 5 BASIC14.82□□□□□ -0.04
Rfx1P48377 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Rfx1P48377 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Tpx2-201ENSMUST00000028969 3654 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Gm24231-201ENSMUST00000104315 133 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC14.82□□□□□ -0.04
Rfx1P48377 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Rfx1P48377 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Rfx1P48377 Gm6652-201ENSMUST00000186414 1070 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 AL593843.1-201ENSMUST00000195891 145 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC14.82□□□□□ -0.04
Rfx1P48377 AC098716.1-201ENSMUST00000213527 703 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC14.82□□□□□ -0.04
Rfx1P48377 AC125206.2-201ENSMUST00000217454 574 ntBASIC14.82□□□□□ -0.04
Rfx1P48377 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Fnbp1-210ENSMUST00000113564 3892 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Rfx1P48377 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
Rfx1P48377 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
Rfx1P48377 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms