Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Abcg4-208ENSMUST00000161354 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gm38042-201ENSMUST00000191614 5208 ntBASIC12.18□□□□□ -0.46
Chd3B1AR17 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Dnaaf1-201ENSMUST00000093100 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Myocd-202ENSMUST00000102635 4935 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gm10767-202ENSMUST00000168767 2067 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Naa15-205ENSMUST00000193266 7480 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Izumo1-201ENSMUST00000033100 1493 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Diaph3-202ENSMUST00000168889 4582 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Diaph3-201ENSMUST00000022599 4582 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Ighv1-52-201ENSMUST00000103522 348 ntAPPRIS ALT2 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gm13996-201ENSMUST00000118456 430 ntBASIC12.18□□□□□ -0.46
Chd3B1AR17 Gm14760-201ENSMUST00000121831 999 ntBASIC12.18□□□□□ -0.46
Chd3B1AR17 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gm18304-201ENSMUST00000189162 546 ntBASIC12.18□□□□□ -0.46
Chd3B1AR17 Vdac1-201ENSMUST00000020673 891 ntTSL 5 BASIC12.18□□□□□ -0.46
Chd3B1AR17 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC12.18□□□□□ -0.46
Chd3B1AR17 Rpl10a-ps2-201ENSMUST00000071184 642 ntBASIC12.18□□□□□ -0.46
Chd3B1AR17 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Llgl2-201ENSMUST00000103032 3551 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Pcyox1-201ENSMUST00000032065 4295 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Mtss1-201ENSMUST00000080371 4938 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Chd3B1AR17 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Chd3B1AR17 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Cluh-201ENSMUST00000092915 5379 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Bin3-201ENSMUST00000022680 1767 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Chchd7-202ENSMUST00000108386 524 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm16481-201ENSMUST00000119074 1227 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 Chchd7-206ENSMUST00000121110 381 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm3625-201ENSMUST00000170816 102 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Chd3B1AR17 2010010A06Rik-201ENSMUST00000185628 258 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm28450-201ENSMUST00000187349 638 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm7848-201ENSMUST00000210739 718 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Ppp1r2-ps3-201ENSMUST00000078012 627 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Islr-201ENSMUST00000041477 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Cadm2-202ENSMUST00000120594 3248 ntAPPRIS ALT1 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Col5a3-201ENSMUST00000004201 6119 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Grin1-201ENSMUST00000028335 4238 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Slc29a2-201ENSMUST00000025826 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Sgk3-202ENSMUST00000166384 3706 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm26361-201ENSMUST00000158868 186 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm4607-201ENSMUST00000206649 577 ntBASIC12.17□□□□□ -0.46
Chd3B1AR17 AC125206.1-201ENSMUST00000214070 739 ntTSL 5 BASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Chd3B1AR17 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
Chd3B1AR17 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
Chd3B1AR17 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Chd3B1AR17 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.16□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 106.5 ms