Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
Scn11aQ9R053 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.65
Scn11aQ9R053 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
Scn11aQ9R053 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC25.36■■□□□ 1.65
Scn11aQ9R053 Kdm3b-204ENSMUST00000224715 2032 ntBASIC25.36■■□□□ 1.65
Scn11aQ9R053 Mef2a-203ENSMUST00000076325 2664 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Scn11aQ9R053 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
Scn11aQ9R053 Cog1-202ENSMUST00000063776 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
Scn11aQ9R053 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
Scn11aQ9R053 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
Scn11aQ9R053 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Scn11aQ9R053 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
Scn11aQ9R053 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Scn11aQ9R053 AC164629.5-201ENSMUST00000220387 632 ntBASIC25.35■■□□□ 1.65
Scn11aQ9R053 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Scn11aQ9R053 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
Scn11aQ9R053 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Scn11aQ9R053 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Scn11aQ9R053 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Scn11aQ9R053 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Scn11aQ9R053 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
Scn11aQ9R053 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Scn11aQ9R053 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Scn11aQ9R053 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC25.34■■□□□ 1.65
Scn11aQ9R053 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Scn11aQ9R053 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
Scn11aQ9R053 Dyrk1b-202ENSMUST00000172467 2523 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
Scn11aQ9R053 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
Scn11aQ9R053 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
Scn11aQ9R053 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC25.33■■□□□ 1.65
Scn11aQ9R053 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.64
Scn11aQ9R053 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Scn11aQ9R053 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
Scn11aQ9R053 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Scn11aQ9R053 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Scn11aQ9R053 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Scn11aQ9R053 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Scn11aQ9R053 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Scn11aQ9R053 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
Scn11aQ9R053 Hs6st3-201ENSMUST00000065904 1708 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Dcun1d5-202ENSMUST00000215683 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Eef1a2-201ENSMUST00000055990 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC25.3■■□□□ 1.64
Scn11aQ9R053 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC25.3■■□□□ 1.64
Scn11aQ9R053 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC25.29■■□□□ 1.64
Scn11aQ9R053 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC25.29■■□□□ 1.64
Scn11aQ9R053 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
Scn11aQ9R053 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC25.28■■□□□ 1.64
Scn11aQ9R053 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC25.28■■□□□ 1.64
Scn11aQ9R053 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Scn11aQ9R053 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Scn11aQ9R053 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
Scn11aQ9R053 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Scn11aQ9R053 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC25.28■■□□□ 1.64
Scn11aQ9R053 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
Scn11aQ9R053 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Scn11aQ9R053 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
Scn11aQ9R053 Ppm1g-205ENSMUST00000202294 1868 ntTSL 5 BASIC25.27■■□□□ 1.64
Scn11aQ9R053 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
Scn11aQ9R053 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
Scn11aQ9R053 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Scn11aQ9R053 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
Scn11aQ9R053 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Scn11aQ9R053 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Scn11aQ9R053 Gm4430-201ENSMUST00000192413 1943 ntBASIC25.25■■□□□ 1.63
Scn11aQ9R053 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Scn11aQ9R053 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC25.25■■□□□ 1.63
Scn11aQ9R053 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Scn11aQ9R053 Gm10657-201ENSMUST00000193528 1031 ntBASIC25.25■■□□□ 1.63
Scn11aQ9R053 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
Scn11aQ9R053 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Scn11aQ9R053 Spcs1-207ENSMUST00000228767 1008 ntBASIC25.24■■□□□ 1.63
Scn11aQ9R053 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Scn11aQ9R053 H3f3aos-201ENSMUST00000097448 2905 ntBASIC25.24■■□□□ 1.63
Scn11aQ9R053 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC25.24■■□□□ 1.63
Scn11aQ9R053 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Scn11aQ9R053 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
Scn11aQ9R053 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Scn11aQ9R053 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Scn11aQ9R053 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
Scn11aQ9R053 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Banp-202ENSMUST00000093078 2289 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms