Protein–RNA interactions for Protein: Q9DB34

Chmp2a, Charged multivesicular body protein 2a, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2aQ9DB34 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC21.78■■□□□ 1.08
Chmp2aQ9DB34 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp2aQ9DB34 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp2aQ9DB34 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Chmp2aQ9DB34 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
Chmp2aQ9DB34 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Chmp2aQ9DB34 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Chmp2aQ9DB34 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Chmp2aQ9DB34 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chmp2aQ9DB34 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Chmp2aQ9DB34 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chmp2aQ9DB34 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2aQ9DB34 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Chmp2aQ9DB34 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC21.72■■□□□ 1.07
Chmp2aQ9DB34 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Chmp2aQ9DB34 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.71■■□□□ 1.07
Chmp2aQ9DB34 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2aQ9DB34 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2aQ9DB34 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2aQ9DB34 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Chmp2aQ9DB34 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Chmp2aQ9DB34 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Gm42418-201ENSMUST00000182010 1831 ntBASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Gm9959-201ENSMUST00000068277 390 ntBASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Chmp2aQ9DB34 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Etf1-202ENSMUST00000180351 108 ntBASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Gm10620-201ENSMUST00000098379 1332 ntBASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Chmp2aQ9DB34 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Chmp2aQ9DB34 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Chmp2aQ9DB34 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
Chmp2aQ9DB34 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC21.67■■□□□ 1.06
Chmp2aQ9DB34 Rps24-207ENSMUST00000224568 714 ntBASIC21.67■■□□□ 1.06
Chmp2aQ9DB34 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Chmp2aQ9DB34 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 15.8 ms