Protein–RNA interactions for Protein: Q9CQX5

Cldnd1, Claudin domain-containing protein 1, mousemouse

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldnd1Q9CQX5 Morn4-201ENSMUST00000051772 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Cldnd1Q9CQX5 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Cldnd1Q9CQX5 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Cldnd1Q9CQX5 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC21.71■■□□□ 1.07
Cldnd1Q9CQX5 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC21.71■■□□□ 1.07
Cldnd1Q9CQX5 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Cldnd1Q9CQX5 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Manf-202ENSMUST00000159283 2247 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Cldnd1Q9CQX5 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Fnta-201ENSMUST00000016138 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Cldnd1Q9CQX5 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Gm43759-201ENSMUST00000196925 1261 ntBASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Gm42569-201ENSMUST00000200539 472 ntBASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Fbxo2-201ENSMUST00000047951 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Txnrd2-214ENSMUST00000205679 1866 ntTSL 5 BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Cldnd1Q9CQX5 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cldnd1Q9CQX5 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Cldnd1Q9CQX5 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cldnd1Q9CQX5 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.67■■□□□ 1.06
Cldnd1Q9CQX5 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Cldnd1Q9CQX5 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cldnd1Q9CQX5 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC21.66■■□□□ 1.06
Cldnd1Q9CQX5 Gm12251-201ENSMUST00000117893 792 ntBASIC21.66■■□□□ 1.06
Cldnd1Q9CQX5 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cldnd1Q9CQX5 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Cldnd1Q9CQX5 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Gm26571-201ENSMUST00000181399 666 ntBASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Cdc34b-202ENSMUST00000188741 1252 ntBASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Cldnd1Q9CQX5 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Gm27405-201ENSMUST00000184201 112 ntBASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Cldnd1Q9CQX5 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Slc36a1-201ENSMUST00000020499 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Cldnd1Q9CQX5 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Gm26833-201ENSMUST00000180899 440 ntBASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Gm10493-201ENSMUST00000097270 612 ntBASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Gm4430-201ENSMUST00000192413 1943 ntBASIC21.62■■□□□ 1.05
Cldnd1Q9CQX5 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Cldnd1Q9CQX5 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Cldnd1Q9CQX5 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cldnd1Q9CQX5 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cldnd1Q9CQX5 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cldnd1Q9CQX5 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Cldnd1Q9CQX5 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Cldnd1Q9CQX5 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms